Mercurial > repos > bgruening > interproscan

comparison interproscan.xml @ 5:2e1cf7d85dbc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 8308746e12723b6a9e56f2ec524070673d74d6cc"
author iuc
date Fri, 19 Nov 2021 12:08:10 +0000
parents fcedfe919603
children 0cd163d805e3
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4:fcedfe919603 5:2e1cf7d85dbc
12 <version_command>interproscan.sh --version</version_command> 12 <version_command>interproscan.sh --version</version_command>
13 <command><![CDATA[ 13 <command><![CDATA[
14 ## Adapt properties file to use data from data table 14 ## Adapt properties file to use data from data table
15 mkdir -p \$HOME/.interproscan-5 15 mkdir -p \$HOME/.interproscan-5
16 && 16 &&
17 sed 's|^\(data.directory=\).*$|\1${database.fields.path}|' \$(dirname \$(readlink -f \$(command -v interproscan.sh)))/interproscan.properties > \$HOME/.interproscan-5/interproscan.properties 17 sed 's|^\(data.directory=\).*$|\1${database.fields.path}/data|' \$(dirname \$(readlink -f \$(command -v interproscan.sh)))/interproscan.properties > \$HOME/.interproscan-5/interproscan.properties
18 && 18 &&
19 19
20 ## Now run interproscan 20 ## Now run interproscan
21 interproscan.sh 21 interproscan.sh
22 22