Mercurial > repos > bgruening > interproscan

comparison interproscan.xml @ 12:74810db257cc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 01e8e726d711c0685f46d3146e4fe0f2a1306036
author iuc
date Wed, 07 Dec 2022 13:41:49 +0000
parents 98cafcbd2578
children
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11:98cafcbd2578 12:74810db257cc
2 <description>functional annotation</description> 2 <description>functional annotation</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools">interproscan_4</xref> 7 <xref type="bio.tools">interproscan_ebi</xref>
8 </xrefs> 8 </xrefs>
9 <requirements> 9 <requirements>
10 <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement>
11 </requirements> 11 </requirements>
12 <version_command>interproscan.sh --version</version_command> 12 <version_command>interproscan.sh --version</version_command>
62 </options> 62 </options>
63 </param> 63 </param>
64 64
65 <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program"> 65 <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program">
66 <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option> 66 <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option>
67 <option value="FunFam" selected="true">FunFam: Prediction of functional annotations for novel, uncharacterized sequences.</option>
67 <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option> 68 <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option>
68 <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option> 69 <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option>
69 <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option> 70 <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option>
70 <option value="Gene3D" selected="true">Gene3d: Structural assignment for whole genes and genomes using the CATH domain structure database</option> 71 <option value="Gene3D" selected="true">Gene3d: Structural assignment for whole genes and genomes using the CATH domain structure database</option>
71 <option value="Hamap" selected="true">HAMAP: High-quality Automated Annotation of Microbial Proteomes</option> 72 <option value="Hamap" selected="true">HAMAP: High-quality Automated Annotation of Microbial Proteomes</option>