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comparison interproscan.xml @ 1:eb12db502d3c draft

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updated tool help
author bgruening
date Wed, 10 Jul 2013 14:34:28 -0400
parents c10e37cca7e3
children 52f20362d488
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0:c10e37cca7e3 1:eb12db502d3c
81 Required is a FASTA file containing ORF predictions. This file must NOT contain any spaces in the FASTA headers - any spaces will be convereted to underscores ``_`` by this tool before running with Interproscan. 81 Required is a FASTA file containing ORF predictions. This file must NOT contain any spaces in the FASTA headers - any spaces will be convereted to underscores ``_`` by this tool before running with Interproscan.
82 82
83 **Output** 83 **Output**
84 84
85 Example for the raw format. 85 Example for the raw format.
86 The output will consist of a tabular file in galaxy with 14 columns and can be easily concatenated or filtered. 86 The output will consist of a file in Interproscan raw format, a tabular file in galaxy with 14 columns.
87 This can be use to upload the data into a relational database or concatenation of different runs.
87 88
88 ====== ================================================================ ====================================================================== 89 ====== ================================================================ ======================================================================
89 column example description 90 column example description
90 ====== ================================================================ ====================================================================== 91 ====== ================================================================ ======================================================================
91 c1 NF00181542 the id of the input sequence 92 c1 NF00181542 the id of the input sequence
228 InterPro: the integrative protein signature database. 229 InterPro: the integrative protein signature database.
229 Nucleic Acids Research 37 (Database Issue), D224-228. 230 Nucleic Acids Research 37 (Database Issue), D224-228.
230 http://dx.doi.org/10.1093/nar/gkn785 231 http://dx.doi.org/10.1093/nar/gkn785
231 232
232 233
234 This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at
235 http://toolshed.g2.bx.psu.edu/view/bgruening/interproscan
236
237
233 **Galaxy Wrapper Author**:: 238 **Galaxy Wrapper Author**::
234 239
235 * Bjoern Gruening, Pharmaceutical Bioinformatics, University of Freiburg 240 * Bjoern Gruening, Pharmaceutical Bioinformatics, University of Freiburg
236 * Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter 241 * Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter
237 242