Mercurial > repos > bgruening > interproscan
view test-data/transcript_out/out.json @ 5:2e1cf7d85dbc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 8308746e12723b6a9e56f2ec524070673d74d6cc"
| author | iuc |
|---|---|
| date | Fri, 19 Nov 2021 12:08:10 +0000 |
| parents | fcedfe919603 |
| children |
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{ "interproscan-version": "5.52-86.0", "results": [ { "id" : 2, "sequence" : "atgccacccacgatcaacaattcggcggtaaacagtgccgccgaaaagcgaccccagcggcaaacggagcgcaaatccgagatcatttgccgcgtgaagtatggaaacaacctgccggatataccatttgatctgaagtttctgcagtaccccttcgacagccaccgcttcgtgcagtacaacccaacgtcgctagagcgtaacttcaagtatgacgtgctgacggaacacgatttgggtgtcacggtggacctgattaaccgggagctctatcaggccgactccatgacgctgctggaccccgccgatgaaaaactgctggaggaggagactctgacgcccacagactctgtgcgttcgcgccagcattcgaggacggtgtcatggttgcgcaaatccgagtacatctccaccgagcagacgcgcttccagccccagaacctggagaacatcgaggccaaggtcggttacaacgtcaagaagtcgcttcgggaggagactctctacctggaccgcgaagcccagatcaaagccatcgagaagaccttcagcgacaccaagagcgaaattaccaagcactattccaagcccaatgtggtgccagtggaggtactgcctatcttccccgacttcaccaactggaagttcccgtgcgcccaggtcatatttgacagtgatcccgctcctgcgggcaagaacgtgcccgcccagctggaggagatgtcgcaggccatgattcgtggtgtgatggacgagagcggcgaacagtttgtcgcctacttcctgcccacagagcagacgctggagaaacgccgtacagacttcatcaatggcgagctgtacaaggaggaggaggagtacgagtacaagatcgctcgagagtacaactggaacgtgaagaccaaagcttccaagggctacgaagaaaactacttcttcgtgatgcgtcaggacggcatctactacaacgagctagaaacccgtgtgcgccttaacaagcgtcgcgttaaggttggccagcaacccaacaacaccaagctggttgtcaagcatcgtccattggacagcatggagcatcgtatgcagcgctatcgcgagcgccagctagaagttcctggcgaggaggaggagatcgtggaagaagtgagggaagaggagcaaatgcaaatcattggcgagacggagaagacgagcgaggacgcagctgttggcgcacaggcagcatctggagcggactcacccgcccaggtagcccgcgatcgacagtctcgttctcggagtcgaactcgcagcgg", "md5" : "1e5f0b711475708f1f8b964633355652", "crossReferences" : [ { "name" : "FUN_000018-T1 FUN_000018", "nucleotideSequence" : 2, "id" : "FUN_000018-T1" } ], "openReadingFrames" : [ { "id" : 5, "start" : 385, "end" : 972, "strand" : "ANTISENSE", "protein" : { "sequence" : "LVVVDAVLTHHEEVVFFVALGSFGLHVPVVLSSDLVLVLLLLLVQLAIDEVCTAFLQRLLCGQEVGDKLFAALVHHTTNHGLRHLLQLGGHVLARRSGITVKYDLGARELPVGEVGEDRQYLHWHHIGLGIVLGNFALGVAEGLLDGFDLGFAVQVESLLPKRLLDVVTDLGLDVLQVLGLEARLLGGDVLGFAQP", "md5" : "3b7c99de3345df5d6c3300ca9b357d7f", "matches" : [ ], "xref" : [ { "name" : "orf355 source=FUN_000018-T1 coords=972..385 length=196 frame=6 desc=FUN_000018", "id" : "orf355" } ] }, "nucleotideSequence" : 2 }, { "id" : 1, "start" : 312, "end" : 668, "strand" : "SENSE", "protein" : { "sequence" : "KTAGGGDSDAHRLCAFAPAFEDGVMVAQIRVHLHRADALPAPEPGEHRGQGRLQRQEVASGGDSLPGPRSPDQSHREDLQRHQERNYQALFQAQCGASGGTAYLPRLHQLEVPVRPGHI", "md5" : "0b28fe115d4cc09260b038b19fb0b21d", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 70, "end" : 84, "location-fragments" : [ { "start" : 70, "end" : 84, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polyampholyte" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 37, "end" : 53, "location-fragments" : [ { "start" : 37, "end" : 53, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polyampholyte" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 37, "end" : 87, "location-fragments" : [ { "start" : 37, "end" : 87, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" } ], "xref" : [ { "name" : "orf336 source=FUN_000018-T1 coords=312..668 length=119 frame=3 desc=FUN_000018", "id" : "orf336" } ] }, "nucleotideSequence" : 2 }, { "id" : 6, "start" : 3, "end" : 269, "strand" : "ANTISENSE", "protein" : { "sequence" : "SSRLIRSTVTPKSCSVSTSYLKLRSSDVGLYCTKRWLSKGYCRNFRSNGISGRLFPYFTRQMISDLRSVCRWGRFSAALFTAELLIVGG", "md5" : "4f98ac73a9278ae1c570e9574f94f160", "matches" : [ ], "xref" : [ { "name" : "orf361 source=FUN_000018-T1 coords=269..3 length=89 frame=4 desc=FUN_000018", "id" : "orf361" } ] }, "nucleotideSequence" : 2 }, { "id" : 12, "start" : 260, "end" : 475, "strand" : "ANTISENSE", "protein" : { "sequence" : "RCNRPWPRCSPGSGAGSASARWRCTRICATMTPSSNAGANAQSLWASESPPPAVFHRRGPAASWSRPDRAPG", "md5" : "aafbe3c8b4e6aa9c5ae6f9f19b280990", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 38, "end" : 72, "location-fragments" : [ { "start" : 38, "end" : 72, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 20, "location-fragments" : [ { "start" : 1, "end" : 20, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" } ], "xref" : [ { "name" : "orf357 source=FUN_000018-T1 coords=475..260 length=72 frame=5 desc=FUN_000018", "id" : "orf357" } ] }, "nucleotideSequence" : 2 }, { "id" : 16, "start" : 678, "end" : 992, "strand" : "SENSE", "protein" : { "sequence" : "SRSCGQERARPAGGDVAGHDSWCDGRERRTVCRLLPAHRADAGETPYRLHQWRAVQGGGGVRVQDRSRVQLEREDQSFQGLRRKLLLRDASGRHLLQRARNPCAP", "md5" : "477d6280d797e71d06bba76c8f4b0a95", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 20, "location-fragments" : [ { "start" : 1, "end" : 20, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" } ], "xref" : [ { "name" : "orf339 source=FUN_000018-T1 coords=678..992 length=105 frame=3 desc=FUN_000018", "id" : "orf339" } ] }, "nucleotideSequence" : 2 }, { "id" : 4, "start" : 1011, "end" : 1295, "strand" : "SENSE", "protein" : { "sequence" : "GWPATQQHQAGCQASSIGQHGASYAALSRAPARSSWRGGGDRGRSEGRGANANHWRDGEDERGRSCWRTGSIWSGLTRPGSPRSTVSFSESNSQR", "md5" : "3b79c550933dca29ee431283750e0521", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 39, "end" : 66, "location-fragments" : [ { "start" : 39, "end" : 66, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polyampholyte" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 22, "location-fragments" : [ { "start" : 1, "end" : 22, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polar" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 95, "location-fragments" : [ { "start" : 1, "end" : 95, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 70, "end" : 95, "location-fragments" : [ { "start" : 70, "end" : 95, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polar" } ], "model-ac" : "mobidb-lite" } ], "xref" : [ { "name" : "orf343 source=FUN_000018-T1 coords=1011..1295 length=95 frame=3 desc=FUN_000018", "id" : "orf343" } ] }, "nucleotideSequence" : 2 }, { "id" : 11, "start" : 338, "end" : 733, "strand" : "SENSE", "protein" : { "sequence" : "RPQTLCVRASIRGRCHGCANPSTSPPSRRASSPRTWRTSRPRSVTTSRSRFGRRLSTWTAKPRSKPSRRPSATPRAKLPSTIPSPMWCQWRYCLSSPTSPTGSSRAPRSYLTVIPLLRARTCPPSWRRCRRP", "md5" : "e1712547dc145b28c8846d277417cf4d", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 17, "end" : 78, "location-fragments" : [ { "start" : 17, "end" : 78, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 20, "end" : 66, "location-fragments" : [ { "start" : 20, "end" : 66, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "Polar" } ], "model-ac" : "mobidb-lite" } ], "xref" : [ { "name" : "orf337 source=FUN_000018-T1 coords=338..733 length=132 frame=2 desc=FUN_000018", "id" : "orf337" } ] }, "nucleotideSequence" : 2 }, { "id" : 14, "start" : 1, "end" : 1293, "strand" : "SENSE", "protein" : { "sequence" : "MPPTINNSAVNSAAEKRPQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEETLTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKHYSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVMDESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQLEVPGEEEEIVEEVREEEQMQIIGETEKTSEDAAVGAQAASGADSPAQVARDRQSRSRSRTRS", "md5" : "5ca2cbf7936c8539c0f5b069cce1b285", "matches" : [ { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 375, "end" : 431, "location-fragments" : [ { "start" : 375, "end" : 431, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 25, "location-fragments" : [ { "start" : 1, "end" : 25, "dc-status" : "CONTINUOUS" } ], "sequence-feature" : "" } ], "model-ac" : "mobidb-lite" }, { "signature" : { "accession" : "mobidb-lite", "name" : "disorder_prediction", "description" : "consensus disorder prediction", "signatureLibraryRelease" : { "library" : "MOBIDB_LITE", "version" : "2.0" }, "entry" : null }, "locations" : [ { "start" : 1, "end" : 16, "location-fragments" : [ { "start" : 1, "end" : 16, "dc-status" : 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"md5" : "bb41314e271ff246f69dd1a3a2cba23a", "crossReferences" : [ { "name" : "FUN_000012-T1 FUN_000012", "nucleotideSequence" : 1, "id" : "FUN_000012-T1" } ], "openReadingFrames" : [ { "id" : 7, "start" : 11206, "end" : 11718, "strand" : "ANTISENSE", "protein" : { "sequence" : "CSRVTPESTTAILARVSQLIGQSATSGFVLALLWVAVTASMIGSNLGSCSRMSGSSCCSGILPLELPFLGPSWFHRLSCGRWHWMISGGWKLHRIRTLHYKGLVIHGLGDVTKAVVPGKTHLVHIVAHIQTFKFATILGIVLIVVSLIPLQFFVELKVLVIPLARRILRAT", "md5" : "69752432fbe284f9672336b1173b136d", "matches" : [ ], "xref" : [ { "name" : "orf142 source=FUN_000012-T1 coords=11718..11206 length=171 frame=4 desc=FUN_000012", "id" : "orf142" } ] }, "nucleotideSequence" : 1 }, { "id" : 10, "start" : 595, "end" : 1110, "strand" : "ANTISENSE", "protein" : { "sequence" : "TTPRENASFAPGRILYGSASEESVIFDAFFPEVFALVATLEEELHGILVISISLRMQFDQESLALERNLAYLSPREGVDPRDVLEDCDAHVGHSQIKRHPFHILRRMHFHAIQLTPPSRLQEVKVRLRRGLTNMLFVVLHNLSLHGGVLVGHKAIRGQISMVGIILRNEVAA", "md5" : "8b5d5a32bfde4a734177a55dd9418154", "matches" : [ ], "xref" : [ { "name" : "orf321 source=FUN_000012-T1 coords=1110..595 length=172 frame=4 desc=FUN_000012", "id" : "orf321" } ] }, "nucleotideSequence" : 1 }, { "id" : 13, "start" : 8374, "end" : 8925, "strand" : "ANTISENSE", "protein" : { "sequence" : "YFCYIGRTYCHFLVQNDLISTLDFACIVCFDVFHYYGSPDSTRWRRRPVKRILRLLERQACLPAERLGHWFVQVRHGVQRVSWLYRHVIEGNFRQWPVLRVLAARIGKAHKCVPLYIITLLFVYMGHRETSRDQGWRLGFIKTTKTGETIPSSRIAWNFRHLRRCSSVSIRNISKICITSRIGA", "md5" : "c792986b585ed45b03b6c21ff3976fe4", "matches" : [ ], "xref" : [ { "name" : "orf196 source=FUN_000012-T1 coords=8925..8374 length=184 frame=4 desc=FUN_000012", "id" : "orf196" } ] }, "nucleotideSequence" : 1 }, { "id" : 3, "start" : 1567, "end" : 2208, "strand" : "ANTISENSE", "protein" : { "sequence" : "LGFAIYSGIYVVAFVKIEVLAIRDLVLLVCRAVKVRILVVPHVVDIGVDYVVRFSFGRVGIGVVEHAWDSCDRSCGRWALAKPEPKAEADAAAAEAAPIVSRLMVDAVKSESTSSSTNSSSSSSPTGSPSSSSVSAVPGSSASSSNSIELLRSTERTTVLVLCIVLWLVLLLGVLMLMSCIVIAWMHTSRIGTALLVVAAVTGRSPRLRSLGRK", "md5" : 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