Mercurial > repos > bgruening > interproscan
changeset 2:52f20362d488 draft
Again help updates.
| author | bgruening |
|---|---|
| date | Wed, 10 Jul 2013 14:53:51 -0400 |
| parents | eb12db502d3c |
| children | 8ee90fc5fe11 |
| files | interproscan.xml |
| diffstat | 1 files changed, 15 insertions(+), 16 deletions(-) [+] |
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--- a/interproscan.xml Wed Jul 10 14:34:28 2013 -0400 +++ b/interproscan.xml Wed Jul 10 14:53:51 2013 -0400 @@ -83,26 +83,25 @@ **Output** Example for the raw format. -The output will consist of a file in Interproscan raw format, a tabular file in galaxy with 14 columns. -This can be use to upload the data into a relational database or concatenation of different runs. +The output will consist of a tabular file with 14 columns and can be easily concatenated or filtered. ====== ================================================================ ====================================================================== column example description ====== ================================================================ ====================================================================== -c1 NF00181542 the id of the input sequence -c2 27A9BBAC0587AB84 the crc64 (checksum) of the protein sequence (supposed to be unique) -c3 272 the length of the sequence (in AA) -c4 HMMPIR the anaysis method launched. -c5 PIRSF001424 the database members entry for this match -c6 Prephenate dehydratase the database member description for the entry -c7 1 the start of the domain match -c8 270 the end of the domain match -c9 6.5e-141 the evalue of the match (reported by member database method) -c10 T the status of the match (T: true, ?: unknown) -c11 06-Aug-2005 the date of the run. -c12 IPR008237 the corresponding InterPro entry (if iprlookup requested by the user) -c13 Prephenate dehydratase with ACT region the description of the InterPro entry -c14 Molecular Function:prephenate dehydratase activity (GO:0004664) the GO (gene ontology) description for the InterPro entry +c1 NF00181542 id of the input sequence +c2 27A9BBAC0587AB84 crc64 (checksum) of the protein sequence (supposed to be unique) +c3 272 length of the sequence (in AA) +c4 HMMPIR anaysis method launched. +c5 PIRSF001424 database members entry for this match +c6 Prephenate dehydratase database member description for the entry +c7 1 start of the domain match +c8 270 end of the domain match +c9 6.5e-141 evalue of the match (reported by member database method) +c10 T status of the match (T: true, ?: unknown) +c11 06-Aug-2005 date of the run. +c12 IPR008237 corresponding InterPro entry (if iprlookup requested by the user) +c13 Prephenate dehydratase with ACT region description of the InterPro entry +c14 Molecular Function:prephenate dehydratase activity (GO:0004664) GO (gene ontology) description for the InterPro entry ====== ================================================================ ====================================================================== **Database updates**