Mercurial > repos > bgruening > interproscan

changeset 12:74810db257cc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 01e8e726d711c0685f46d3146e4fe0f2a1306036
author iuc
date Wed, 07 Dec 2022 13:41:49 +0000
parents 98cafcbd2578
children
files README.md interproscan.xml macros.xml test-data/interproscan.loc
diffstat 4 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/README.md	Fri Apr 29 20:14:21 2022 +0000
+++ b/README.md	Wed Dec 07 13:41:49 2022 +0000
@@ -17,7 +17,7 @@
 
 - You agree with each software license
 - InterProScan was installed using Conda in the `IPRSCAN_DIR` directory
-- You have run the InterProScan data manager which placed the data files in the `IPRSCAN_DATA_DIR` directory (e.g. `/data/db/data_managers/interproscan/5.55-88.0/`)
+- You have run the InterProScan data manager which placed the data files in the `IPRSCAN_DATA_DIR` directory (e.g. `/data/db/data_managers/interproscan/5.59-91.0/`)
 
 Everytime you upgrade InterProScan, you'll need to do the same things: modify the `${IPRSCAN_DIR}/share/InterProScan/interproscan.properties` file + add the SMART file.
 
--- a/interproscan.xml	Fri Apr 29 20:14:21 2022 +0000
+++ b/interproscan.xml	Wed Dec 07 13:41:49 2022 +0000
@@ -4,7 +4,7 @@
         <import>macros.xml</import>
     </macros>
     <xrefs>
-        <xref type="bio.tools">interproscan_4</xref>
+        <xref type="bio.tools">interproscan_ebi</xref>
     </xrefs>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement>
@@ -64,6 +64,7 @@
 
         <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program">
             <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option>
+            <option value="FunFam" selected="true">FunFam: Prediction of functional annotations for novel, uncharacterized sequences.</option>
             <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option>
             <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option>
             <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option>
--- a/macros.xml	Fri Apr 29 20:14:21 2022 +0000
+++ b/macros.xml	Wed Dec 07 13:41:49 2022 +0000
@@ -5,7 +5,7 @@
         Conda understands both notations, but the Galaxy tool requires the use of "-".
         The version should also be bumped in test-data/interproscan.loc
     -->
-    <token name="@TOOL_VERSION@">5.55-88.0</token>
+    <token name="@TOOL_VERSION@">5.59-91.0</token>
     <token name="@VERSION_SUFFIX@">3</token>
 
     <xml name="citations">
--- a/test-data/interproscan.loc	Fri Apr 29 20:14:21 2022 +0000
+++ b/test-data/interproscan.loc	Wed Dec 07 13:41:49 2022 +0000
@@ -5,4 +5,4 @@
 # value	description	interproscan_version	path
 #
 # for example
-5.55-88.0	InterProScan 5.55-88.0	5.55-88.0	${__HERE__}/fake_db/
+5.59-91.0	InterProScan 5.59-91.0	5.59-91.0	${__HERE__}/fake_db/