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1 ================================================
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2 Galaxy wrapper for InterProScan prediction tools
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3 ================================================
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4
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5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro
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6 member databases into one resource with look up of corresponding InterPro and GO annotation.
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7
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8 This wrapper is copyright 2013 by:
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9 * Bjoern Gruening
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10 * Konrad Paszkiewicz
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11
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12
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13 This prepository contains wrapper for the InterProScan_ command line tool.
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14
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15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html
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16
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17
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18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120
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19
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20
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21 ============
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22 Installation
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23 ============
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24
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25 Please download install InterProScan according to:
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26
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27 https://code.google.com/p/interproscan/wiki/HowToDownload
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28
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29
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30 ========
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31 Citation
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32 ========
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33
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34 If you use this Galaxy tool in work leading to a scientific
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35 publication, in addition to citing the invididual underlying tools, please cite:
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36
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37 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
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38 Galaxy tools and workflows for sequence analysis with applications
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39 in molecular plant pathology. PeerJ 1:e167
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40 http://dx.doi.org/10.7717/peerj.167
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41
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42 Full reference information is included in the help text.
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43
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44
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45 =============
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46 Input formats
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47 =============
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48
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49 The standard interproscan input is either genomic or protein sequences.
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50 In the case of genomic sequences Interproscan will run an ORF prediction tool.
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51
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52
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53 =======
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54 History
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55 =======
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56
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57 interproscan:
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58
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59 - v5.0: Initial public release of version 5.0
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60
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61
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62 ===============================
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63 Wrapper Licence (MIT/BSD style)
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64 ===============================
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65
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66 Permission to use, copy, modify, and distribute this software and its
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67 documentation with or without modifications and for any purpose and
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68 without fee is hereby granted, provided that any copyright notices
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69 appear in all copies and that both those copyright notices and this
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70 permission notice appear in supporting documentation, and that the
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71 names of the contributors or copyright holders not be used in
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72 advertising or publicity pertaining to distribution of the software
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73 without specific prior permission.
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74
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75 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
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76 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
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77 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
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78 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
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79 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
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80 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
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81 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
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82 OR PERFORMANCE OF THIS SOFTWARE.
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83
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