Mercurial > repos > bgruening > interproscan5
comparison readme.rst @ 1:e32f2ea6a139 draft default tip
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author | bgruening |
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date | Tue, 08 Oct 2013 10:23:22 -0400 |
parents | 82547f0d3a29 |
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1 ================================================ | 1 ================================================== |
2 Galaxy wrapper for InterProScan prediction tools | 2 Galaxy wrapper for InterProScan 5 prediction tools |
3 ================================================ | 3 ================================================== |
4 | 4 |
5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro | 5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro |
6 member databases into one resource with look up of corresponding InterPro and GO annotation. | 6 member databases into one resource with look up of corresponding InterPro and GO annotation. |
7 | 7 |
8 This wrapper is copyright 2013 by: | 8 This wrapper is copyright 2013 by: |
9 * Bjoern Gruening | 9 * Bjoern Gruening |
10 * Konrad Paszkiewicz | 10 * Konrad Paszkiewicz |
11 | 11 |
12 | 12 |
13 This prepository contains wrapper for the InterProScan_ command line tool. | 13 This prepository contains a wrapper for the InterProScan_ command line tool. |
14 | 14 |
15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html | 15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html |
16 | 16 |
17 | 17 |
18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120 | 18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120 |
57 interproscan: | 57 interproscan: |
58 | 58 |
59 - v5.0: Initial public release of version 5.0 | 59 - v5.0: Initial public release of version 5.0 |
60 | 60 |
61 | 61 |
62 =============================== | 62 ============= |
63 Wrapper Licence (MIT/BSD style) | 63 Licence (MIT) |
64 =============================== | 64 ============= |
65 | 65 |
66 Permission to use, copy, modify, and distribute this software and its | 66 Permission is hereby granted, free of charge, to any person obtaining a copy |
67 documentation with or without modifications and for any purpose and | 67 of this software and associated documentation files (the "Software"), to deal |
68 without fee is hereby granted, provided that any copyright notices | 68 in the Software without restriction, including without limitation the rights |
69 appear in all copies and that both those copyright notices and this | 69 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell |
70 permission notice appear in supporting documentation, and that the | 70 copies of the Software, and to permit persons to whom the Software is |
71 names of the contributors or copyright holders not be used in | 71 furnished to do so, subject to the following conditions: |
72 advertising or publicity pertaining to distribution of the software | |
73 without specific prior permission. | |
74 | 72 |
75 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL | 73 The above copyright notice and this permission notice shall be included in |
76 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED | 74 all copies or substantial portions of the Software. |
77 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE | |
78 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT | |
79 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS | |
80 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE | |
81 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE | |
82 OR PERFORMANCE OF THIS SOFTWARE. | |
83 | 75 |
76 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | |
77 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | |
78 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | |
79 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | |
80 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | |
81 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN | |
82 THE SOFTWARE. | |
83 |