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author bgruening
date Tue, 08 Oct 2013 10:23:22 -0400
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0:82547f0d3a29 1:e32f2ea6a139
1 ================================================ 1 ==================================================
2 Galaxy wrapper for InterProScan prediction tools 2 Galaxy wrapper for InterProScan 5 prediction tools
3 ================================================ 3 ==================================================
4 4
5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro 5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro
6 member databases into one resource with look up of corresponding InterPro and GO annotation. 6 member databases into one resource with look up of corresponding InterPro and GO annotation.
7 7
8 This wrapper is copyright 2013 by: 8 This wrapper is copyright 2013 by:
9 * Bjoern Gruening 9 * Bjoern Gruening
10 * Konrad Paszkiewicz 10 * Konrad Paszkiewicz
11 11
12 12
13 This prepository contains wrapper for the InterProScan_ command line tool. 13 This prepository contains a wrapper for the InterProScan_ command line tool.
14 14
15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html 15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html
16 16
17 17
18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120 18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120
57 interproscan: 57 interproscan:
58 58
59 - v5.0: Initial public release of version 5.0 59 - v5.0: Initial public release of version 5.0
60 60
61 61
62 =============================== 62 =============
63 Wrapper Licence (MIT/BSD style) 63 Licence (MIT)
64 =============================== 64 =============
65 65
66 Permission to use, copy, modify, and distribute this software and its 66 Permission is hereby granted, free of charge, to any person obtaining a copy
67 documentation with or without modifications and for any purpose and 67 of this software and associated documentation files (the "Software"), to deal
68 without fee is hereby granted, provided that any copyright notices 68 in the Software without restriction, including without limitation the rights
69 appear in all copies and that both those copyright notices and this 69 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
70 permission notice appear in supporting documentation, and that the 70 copies of the Software, and to permit persons to whom the Software is
71 names of the contributors or copyright holders not be used in 71 furnished to do so, subject to the following conditions:
72 advertising or publicity pertaining to distribution of the software
73 without specific prior permission.
74 72
75 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL 73 The above copyright notice and this permission notice shall be included in
76 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED 74 all copies or substantial portions of the Software.
77 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
78 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
79 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
80 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
81 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
82 OR PERFORMANCE OF THIS SOFTWARE.
83 75
76 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
77 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
78 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
79 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
80 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
81 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
82 THE SOFTWARE.
83