Mercurial > repos > bgruening > keras_batch_models

diff keras_batch_models.xml @ 5:62b85c8ad8fa draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
author bgruening
date Mon, 16 Dec 2019 05:26:20 -0500
parents 000a3868885b
children 0a3f113397b2
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--- a/keras_batch_models.xml	Thu Nov 07 05:33:41 2019 -0500
+++ b/keras_batch_models.xml	Mon Dec 16 05:26:20 2019 -0500
@@ -38,7 +38,7 @@
             <option value="FastaRNABatchGenerator">FastaRNABatchGenerator -- Online transformation of RNA sequences</option>
             <option value="FastaProteinBatchGenerator">FastaProteinBatchGenerator -- Online transformation of Protein sequences</option>
             <option value="GenomicIntervalBatchGenerator">GenomicIntervalBatchGenerator - Online transformation of genomic sequences from a reference genome and intervals</option>
-            <!--option value="ImageBatchGenerator">ImageBatchGenerator - Online transformation of images</option-->
+            <option value="none">To be determined</option>
           </param>
           <when value="FastaDNABatchGenerator">
             <expand macro="params_fasta_dna_batch_generator"/>
@@ -52,9 +52,7 @@
           <when value="GenomicIntervalBatchGenerator">
             <expand macro="params_genomic_interval_batch_generator"/>
           </when>
-          <!--when value="ImageBatchGenerator">
-            <expand macro="params_image_batch_generator"/>
-          </when-->
+          <when value="none"/>
         </conditional>
         <expand macro="keras_compile_params_section"/>
         <expand macro="keras_fit_params_section"/>
@@ -74,6 +72,26 @@
   <tests>
     <test>
       <conditional name="mode_selection">
+        <param name="infile_json" value="keras01.json" ftype="json"/>
+        <param name="learning_type" value="KerasGBatchClassifier"/>
+        <conditional name="generator_selection">
+          <param name="generator_type" value="none"/>
+        </conditional>
+        <section name="fit_params">
+          <param name="epochs" value="100"/>
+          <repeat name="callbacks">
+            <conditional name="callback_selection">
+              <param name="callback_type" value="None"/>
+            </conditional>
+          </repeat>
+        </section>
+      </conditional>
+      <param name="get_params" value="true" />
+      <output name="outfile" file="keras_batch_model04" compare="sim_size" delta="5"/>
+      <output name="outfile_params" file="keras_batch_params04.tabular" />
+    </test>
+    <test>
+      <conditional name="mode_selection">
         <param name="infile_json" value="deepsear_1feature.json" ftype="json"/>
         <param name="learning_type" value="KerasGBatchClassifier"/>
         <conditional name="generator_selection">