Mercurial > repos > bgruening > keras_model_config

comparison keras_model_config.xml @ 1:0fd7d8e90e2a draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
author bgruening
date Fri, 13 Sep 2019 12:19:45 -0400
parents 1046cf73236b
children 4471d2b2de79
comparison
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0:1046cf73236b 1:0fd7d8e90e2a
166 <expand macro="layer_LocallyConnected1D"/> 166 <expand macro="layer_LocallyConnected1D"/>
167 </when> 167 </when>
168 <when value="LocallyConnected2D"> 168 <when value="LocallyConnected2D">
169 <expand macro="layer_LocallyConnected2D"/> 169 <expand macro="layer_LocallyConnected2D"/>
170 </when> 170 </when>
171 <when value="RNN">
172 </when>
173 <when value="Masking">
174 </when>
175 <when value="SimpleRNN"> 171 <when value="SimpleRNN">
172 <expand macro="layer_SimpleRNN"/>
176 </when> 173 </when>
177 <when value="GRU"> 174 <when value="GRU">
175 <expand macro="layer_GRU"/>
178 </when> 176 </when>
179 <when value="LSTM"> 177 <when value="LSTM">
178 <expand macro="layer_LSTM"/>
180 </when> 179 </when>
181 <when value="ConvLSTM2D"> 180 <when value="ConvLSTM2D">
181 <expand macro="layer_ConvLSTM2D"/>
182 </when> 182 </when>
183 <when value="ConvLSTM2DCell"> 183 <when value="ConvLSTM2DCell">
184 <expand macro="layer_ConvLSTM2DCell"/>
184 </when> 185 </when>
185 <when value="SimpleRNNCell"> 186 <when value="SimpleRNNCell">
187 <expand macro="layer_SimpleRNNCell"/>
186 </when> 188 </when>
187 <when value="GRUCell"> 189 <when value="GRUCell">
190 <expand macro="layer_GRUCell"/>
188 </when> 191 </when>
189 <when value="LSTMCell"> 192 <when value="LSTMCell">
193 <expand macro="layer_LSTMCell"/>
190 </when> 194 </when>
191 <when value="CuDNNGRU"> 195 <when value="CuDNNGRU">
196 <expand macro="layer_CuDNNGRU"/>
192 </when> 197 </when>
193 <when value="CuDNNLSTM"> 198 <when value="CuDNNLSTM">
199 <expand macro="layer_CuDNNLSTM"/>
194 </when> 200 </when>
195 <when value="Embedding"> 201 <when value="Embedding">
196 <expand macro="layer_Embedding"/> 202 <expand macro="layer_Embedding"/>
197 </when> 203 </when>
198 <when value="LeakyReLU"> 204 <when value="LeakyReLU">
212 </when> 218 </when>
213 <when value="ReLU"> 219 <when value="ReLU">
214 <expand macro="layer_ReLU"/> 220 <expand macro="layer_ReLU"/>
215 </when> 221 </when>
216 <when value="BatchNormalization"> 222 <when value="BatchNormalization">
217 <expand macro="layer_Embedding"/> 223 <expand macro="layer_BatchNormalization"/>
218 </when> 224 </when>
219 <when value="GaussianNoise"> 225 <when value="GaussianNoise">
220 <expand macro="layer_Embedding"/> 226 <expand macro="layer_GaussianNoise"/>
221 </when> 227 </when>
222 <when value="GaussianDropout"> 228 <when value="GaussianDropout">
223 <expand macro="layer_Embedding"/> 229 <expand macro="layer_GaussianDropout"/>
224 </when> 230 </when>
225 <when value="AlphaDropout"> 231 <when value="AlphaDropout">
226 <expand macro="layer_Embedding"/> 232 <expand macro="layer_AlphaDropout"/>
227 </when> 233 </when>
228 </conditional> 234 </conditional>
229 </repeat> 235 </repeat>
230 </when> 236 </when>
231 <when value="functional"> 237 <when value="functional">
460 <when value="LocallyConnected2D"> 466 <when value="LocallyConnected2D">
461 <expand macro="layer_LocallyConnected2D"> 467 <expand macro="layer_LocallyConnected2D">
462 <expand macro="inbound_nodes_index"/> 468 <expand macro="inbound_nodes_index"/>
463 </expand> 469 </expand>
464 </when> 470 </when>
465 <when value="RNN">
466 </when>
467 <when value="Masking">
468 </when>
469 <when value="SimpleRNN"> 471 <when value="SimpleRNN">
472 <expand macro="layer_SimpleRNN">
473 <expand macro="inbound_nodes_index"/>
474 </expand>
470 </when> 475 </when>
471 <when value="GRU"> 476 <when value="GRU">
477 <expand macro="layer_GRU">
478 <expand macro="inbound_nodes_index"/>
479 </expand>
472 </when> 480 </when>
473 <when value="LSTM"> 481 <when value="LSTM">
474 <expand macro="layer_LSTM"> 482 <expand macro="layer_LSTM">
475 <expand macro="inbound_nodes_index"/> 483 <expand macro="inbound_nodes_index"/>
476 </expand> 484 </expand>
477 </when> 485 </when>
478 <when value="ConvLSTM2D"> 486 <when value="ConvLSTM2D">
487 <expand macro="layer_ConvLSTM2D">
488 <expand macro="inbound_nodes_index"/>
489 </expand>
479 </when> 490 </when>
480 <when value="ConvLSTM2DCell"> 491 <when value="ConvLSTM2DCell">
492 <expand macro="layer_ConvLSTM2DCell">
493 <expand macro="inbound_nodes_index"/>
494 </expand>
481 </when> 495 </when>
482 <when value="SimpleRNNCell"> 496 <when value="SimpleRNNCell">
497 <expand macro="layer_SimpleRNNCell">
498 <expand macro="inbound_nodes_index"/>
499 </expand>
483 </when> 500 </when>
484 <when value="GRUCell"> 501 <when value="GRUCell">
502 <expand macro="layer_GRUCell">
503 <expand macro="inbound_nodes_index"/>
504 </expand>
485 </when> 505 </when>
486 <when value="LSTMCell"> 506 <when value="LSTMCell">
507 <expand macro="layer_LSTMCell">
508 <expand macro="inbound_nodes_index"/>
509 </expand>
487 </when> 510 </when>
488 <when value="CuDNNGRU"> 511 <when value="CuDNNGRU">
512 <expand macro="layer_CuDNNGRU">
513 <expand macro="inbound_nodes_index"/>
514 </expand>
489 </when> 515 </when>
490 <when value="CuDNNLSTM"> 516 <when value="CuDNNLSTM">
517 <expand macro="layer_CuDNNLSTM">
518 <expand macro="inbound_nodes_index"/>
519 </expand>
491 </when> 520 </when>
492 <when value="Add"> 521 <when value="Add">
493 <expand macro="layer_merge"/> 522 <expand macro="layer_merge"/>
494 </when> 523 </when>
495 <when value="Subtract"> 524 <when value="Subtract">
547 <expand macro="layer_ReLU"> 576 <expand macro="layer_ReLU">
548 <expand macro="inbound_nodes_index"/> 577 <expand macro="inbound_nodes_index"/>
549 </expand> 578 </expand>
550 </when> 579 </when>
551 <when value="BatchNormalization"> 580 <when value="BatchNormalization">
552 <expand macro="layer_Embedding"> 581 <expand macro="layer_BatchNormalization">
553 <expand macro="inbound_nodes_index"/> 582 <expand macro="inbound_nodes_index"/>
554 </expand> 583 </expand>
555 </when> 584 </when>
556 <when value="GaussianNoise"> 585 <when value="GaussianNoise">
557 <expand macro="layer_Embedding"> 586 <expand macro="layer_GaussianNoise">
558 <expand macro="inbound_nodes_index"/> 587 <expand macro="inbound_nodes_index"/>
559 </expand> 588 </expand>
560 </when> 589 </when>
561 <when value="GaussianDropout"> 590 <when value="GaussianDropout">
562 <expand macro="layer_Embedding"> 591 <expand macro="layer_GaussianDropout">
563 <expand macro="inbound_nodes_index"/> 592 <expand macro="inbound_nodes_index"/>
564 </expand> 593 </expand>
565 </when> 594 </when>
566 <when value="AlphaDropout"> 595 <when value="AlphaDropout">
567 <expand macro="layer_Embedding"> 596 <expand macro="layer_AlphaDropout">
568 <expand macro="inbound_nodes_index"/> 597 <expand macro="inbound_nodes_index"/>
569 </expand> 598 </expand>
570 </when> 599 </when>
571 </conditional> 600 </conditional>
572 </repeat> 601 </repeat>
640 <repeat name="layers"> 669 <repeat name="layers">
641 <conditional name="layer_selection"> 670 <conditional name="layer_selection">
642 <param name="layer_type" value="Embedding"/> 671 <param name="layer_type" value="Embedding"/>
643 <param name="input_dim" value="10000"/> 672 <param name="input_dim" value="10000"/>
644 <param name="output_dim" value="512"/> 673 <param name="output_dim" value="512"/>
645 <section name="layer_options"> 674 <param name="kwargs" value="input_length=100"/>
646 <param name="input_length" value="100"/>
647 </section>
648 <param name="inbound_nodes" value="1"/> 675 <param name="inbound_nodes" value="1"/>
649 </conditional> 676 </conditional>
650 </repeat> 677 </repeat>
651 <repeat name="layers"> 678 <repeat name="layers">
652 <conditional name="layer_selection"> 679 <conditional name="layer_selection">
657 </repeat> 684 </repeat>
658 <repeat name="layers"> 685 <repeat name="layers">
659 <conditional name="layer_selection"> 686 <conditional name="layer_selection">
660 <param name="layer_type" value="Dense"/> 687 <param name="layer_type" value="Dense"/>
661 <param name="units" value="1"/> 688 <param name="units" value="1"/>
662 <section name="layer_options"> 689 <param name="activation" value="sigmoid"/>
663 <param name="activation" value="sigmoid"/>
664 </section>
665 <param name="inbound_nodes" value="3"/> 690 <param name="inbound_nodes" value="3"/>
666 </conditional> 691 </conditional>
667 </repeat> 692 </repeat>
668 <repeat name="layers"> 693 <repeat name="layers">
669 <conditional name="layer_selection"> 694 <conditional name="layer_selection">
681 </repeat> 706 </repeat>
682 <repeat name="layers"> 707 <repeat name="layers">
683 <conditional name="layer_selection"> 708 <conditional name="layer_selection">
684 <param name="layer_type" value="Dense"/> 709 <param name="layer_type" value="Dense"/>
685 <param name="units" value="64"/> 710 <param name="units" value="64"/>
686 <section name="layer_options"> 711 <param name="activation" value="relu"/>
687 <param name="activation" value="relu"/>
688 </section>
689 <param name="inbound_nodes" value="6"/> 712 <param name="inbound_nodes" value="6"/>
690 </conditional> 713 </conditional>
691 </repeat> 714 </repeat>
692 <repeat name="layers"> 715 <repeat name="layers">
693 <conditional name="layer_selection"> 716 <conditional name="layer_selection">
694 <param name="layer_type" value="Dense"/> 717 <param name="layer_type" value="Dense"/>
695 <param name="units" value="64"/> 718 <param name="units" value="64"/>
696 <section name="layer_options"> 719 <param name="activation" value="relu"/>
697 <param name="activation" value="relu"/>
698 </section>
699 <param name="inbound_nodes" value="7"/> 720 <param name="inbound_nodes" value="7"/>
700 </conditional> 721 </conditional>
701 </repeat> 722 </repeat>
702 <repeat name="layers"> 723 <repeat name="layers">
703 <conditional name="layer_selection"> 724 <conditional name="layer_selection">
704 <param name="layer_type" value="Dense"/> 725 <param name="layer_type" value="Dense"/>
705 <param name="units" value="64"/> 726 <param name="units" value="64"/>
706 <section name="layer_options"> 727 <param name="activation" value="relu"/>
707 <param name="activation" value="relu"/>
708 </section>
709 <param name="inbound_nodes" value="8"/> 728 <param name="inbound_nodes" value="8"/>
710 </conditional> 729 </conditional>
711 </repeat> 730 </repeat>
712 <repeat name="layers"> 731 <repeat name="layers">
713 <conditional name="layer_selection"> 732 <conditional name="layer_selection">
714 <param name="layer_type" value="Dense"/> 733 <param name="layer_type" value="Dense"/>
715 <param name="units" value="1"/> 734 <param name="units" value="1"/>
716 <section name="layer_options"> 735 <param name="activation" value="sigmoid"/>
717 <param name="activation" value="sigmoid"/>
718 </section>
719 <param name="inbound_nodes" value="9"/> 736 <param name="inbound_nodes" value="9"/>
720 </conditional> 737 </conditional>
721 </repeat> 738 </repeat>
722 <param name="input_layers" value="[1, 5]"/> 739 <param name="input_layers" value="[1, 5]"/>
723 <param name="output_layers" value="[4, 10]"/> 740 <param name="output_layers" value="[4, 10]"/>