Mercurial > repos > bgruening > keras_model_config
diff keras_model_config.xml @ 9:4471d2b2de79 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
| author | bgruening |
|---|---|
| date | Tue, 13 Apr 2021 18:25:32 +0000 |
| parents | 0fd7d8e90e2a |
| children | 6eb4e7fb0f91 |
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--- a/keras_model_config.xml Thu Oct 01 21:00:28 2020 +0000 +++ b/keras_model_config.xml Tue Apr 13 18:25:32 2021 +0000 @@ -1,780 +1,778 @@ -<tool id="keras_model_config" name="Create a deep learning model architecture" version="@KERAS_VERSION@"> - <description>using Keras</description> - <macros> - <import>main_macros.xml</import> - <import>keras_macros.xml</import> - </macros> - <expand macro="python_requirements"/> - <expand macro="macro_stdio"/> - <version_command>echo "@KERAS_VERSION@"</version_command> - <command> - <![CDATA[ +<tool id="keras_model_config" name="Create a deep learning model architecture" version="@KERAS_VERSION@" profile="20.05"> + <description>using Keras</description> + <macros> + <import>main_macros.xml</import> + <import>keras_macros.xml</import> + </macros> + <expand macro="python_requirements" /> + <expand macro="macro_stdio" /> + <version_command>echo "@KERAS_VERSION@"</version_command> + <command> + <![CDATA[ python '$__tool_directory__/keras_deep_learning.py' --inputs '$inputs' --tool_id 'keras_model_config' --outfile '$outfile' ]]> - </command> - <configfiles> - <inputs name="inputs"/> - </configfiles> - <inputs> - <conditional name="model_selection"> - <param name="model_type" type="select" label="Select keras model type"> - <option value="sequential" selected="true">Sequential</option> - <option value="functional">Model (functional API)</option> - </param> - <when value="sequential"> - <param argument="input_shape" type="text" value="(32, )" optional="true" label="input_shape" help="Tuple of integers or None. Required for the first layer."/> - <repeat name="layers" min="1" max="500" title="LAYER"> - <conditional name="layer_selection"> - <param name="layer_type" type="select" label="Choose the type of layer"> - <expand macro="keras_layer_types_core"/> - <expand macro="keras_layer_types_Convolutional"/> - <expand macro="keras_layer_types_Pooling"/> - <expand macro="keras_layer_types_locally_connected"/> - <expand macro="keras_layer_types_recurrent"/> - <expand macro="keras_layer_types_embedding"/> - <expand macro="keras_layer_types_advanced_activations"/> - <expand macro="keras_layer_types_normalization"/> - <expand macro="keras_layer_types_noise"/> + </command> + <configfiles> + <inputs name="inputs" /> + </configfiles> + <inputs> + <conditional name="model_selection"> + <param name="model_type" type="select" label="Select keras model type"> + <option value="sequential" selected="true">Sequential</option> + <option value="functional">Model (functional API)</option> </param> - <when value="Dense"> - <expand macro="layer_Dense"/> - </when> - <when value="Activation"> - <expand macro="keras_activations"/> - </when> - <when value="Dropout"> - <expand macro="layer_Dropout"/> - </when> - <when value="Flatten"> - <expand macro="layer_Flatten"/> - </when> - <when value="Reshape"> - <expand macro="layer_Reshape"/> - </when> - <when value="Permute"> - <expand macro="layer_Permute"/> - </when> - <when value="RepeatVector"> - <expand macro="layer_RepeatVector"/> - </when> - <when value="ActivityRegularization"> - <expand macro="layer_ActivityRegularization"/> - </when> - <when value="Masking"> - <expand macro="layer_Masking"/> - </when> - <when value="SpatialDropout1D"> - <expand macro="layer_SpatialDropout1D"/> - </when> - <when value="SpatialDropout2D"> - <expand macro="layer_SpatialDropout2D"/> - </when> - <when value="SpatialDropout3D"> - <expand macro="layer_SpatialDropout3D"/> - </when> - <when value="Conv1D"> - <expand macro="layer_Conv1D"/> - </when> - <when value="Conv2D"> - <expand macro="layer_Conv2D"/> - </when> - <when value="SeparableConv1D"> - <expand macro="layer_SeparableConv1D"/> - </when> - <when value="SeparableConv2D"> - <expand macro="layer_SeparableConv2D"/> - </when> - <when value="DepthwiseConv2D"> - <expand macro="layer_DepthwiseConv2D"/> - </when> - <when value="Conv2DTranspose"> - <expand macro="layer_Conv2DTranspose"/> - </when> - <when value="Conv3D"> - <expand macro="layer_Conv3D"/> - </when> - <when value="Conv3DTranspose"> - <expand macro="layer_Conv3DTranspose"/> - </when> - <when value="Cropping1D"> - <expand macro="layer_Cropping1D"/> - </when> - <when value="Cropping2D"> - <expand macro="layer_Cropping2D"/> - </when> - <when value="Cropping3D"> - <expand macro="layer_Cropping3D"/> - </when> - <when value="UpSampling1D"> - <expand macro="layer_UpSampling1D"/> - </when> - <when value="UpSampling2D"> - <expand macro="layer_UpSampling2D"/> - </when> - <when value="UpSampling3D"> - <expand macro="layer_UpSampling3D"/> - </when> - <when value="ZeroPadding1D"> - <expand macro="layer_ZeroPadding1D"/> - </when> - <when value="ZeroPadding2D"> - <expand macro="layer_ZeroPadding2D"/> - </when> - <when value="ZeroPadding3D"> - <expand macro="layer_ZeroPadding3D"/> - </when> - <when value="MaxPooling1D"> - <expand macro="layer_MaxPooling1D"/> - </when> - <when value="MaxPooling2D"> - <expand macro="layer_MaxPooling2D"/> - </when> - <when value="MaxPooling3D"> - <expand macro="layer_MaxPooling3D"/> - </when> - <when value="AveragePooling1D"> - <expand macro="layer_AveragePooling1D"/> - </when> - <when value="AveragePooling2D"> - <expand macro="layer_AveragePooling2D"/> - </when> - <when value="AveragePooling3D"> - <expand macro="layer_AveragePooling3D"/> - </when> - <when value="GlobalMaxPooling1D"> - <expand macro="layer_GlobalMaxPooling1D"/> - </when> - <when value="GlobalAveragePooling1D"> - <expand macro="layer_GlobalAveragePooling1D"/> - </when> - <when value="GlobalMaxPooling2D"> - <expand macro="layer_GlobalMaxPooling2D"/> - </when> - <when value="GlobalAveragePooling2D"> - <expand macro="layer_GlobalAveragePooling2D"/> - </when> - <when value="GlobalMaxPooling3D"> - <expand macro="layer_GlobalMaxPooling3D"/> - </when> - <when value="GlobalAveragePooling3D"> - <expand macro="layer_GlobalAveragePooling3D"/> - </when> - <when value="LocallyConnected1D"> - <expand macro="layer_LocallyConnected1D"/> - </when> - <when value="LocallyConnected2D"> - <expand macro="layer_LocallyConnected2D"/> - </when> - <when value="SimpleRNN"> - <expand macro="layer_SimpleRNN"/> - </when> - <when value="GRU"> - <expand macro="layer_GRU"/> - </when> - <when value="LSTM"> - <expand macro="layer_LSTM"/> - </when> - <when value="ConvLSTM2D"> - <expand macro="layer_ConvLSTM2D"/> - </when> - <when value="ConvLSTM2DCell"> - <expand macro="layer_ConvLSTM2DCell"/> - </when> - <when value="SimpleRNNCell"> - <expand macro="layer_SimpleRNNCell"/> - </when> - <when value="GRUCell"> - <expand macro="layer_GRUCell"/> - </when> - <when value="LSTMCell"> - <expand macro="layer_LSTMCell"/> - </when> - <when value="CuDNNGRU"> - <expand macro="layer_CuDNNGRU"/> - </when> - <when value="CuDNNLSTM"> - <expand macro="layer_CuDNNLSTM"/> - </when> - <when value="Embedding"> - <expand macro="layer_Embedding"/> - </when> - <when value="LeakyReLU"> - <expand macro="layer_LeakyReLU"/> - </when> - <when value="PReLU"> - <expand macro="layer_PReLU"/> - </when> - <when value="ELU"> - <expand macro="layer_ELU"/> - </when> - <when value="ThresholdedReLU"> - <expand macro="layer_ThresholdedReLU"/> - </when> - <when value="Softmax"> - <expand macro="layer_Softmax"/> - </when> - <when value="ReLU"> - <expand macro="layer_ReLU"/> - </when> - <when value="BatchNormalization"> - <expand macro="layer_BatchNormalization"/> - </when> - <when value="GaussianNoise"> - <expand macro="layer_GaussianNoise"/> - </when> - <when value="GaussianDropout"> - <expand macro="layer_GaussianDropout"/> - </when> - <when value="AlphaDropout"> - <expand macro="layer_AlphaDropout"/> - </when> - </conditional> - </repeat> - </when> - <when value="functional"> - <repeat name="layers" min="1" max="500" title="LAYER"> - <conditional name="layer_selection"> - <param name="layer_type" type="select" label="Choose the type of layer"> - <option value="Input">Input</option> - <expand macro="keras_layer_types_core"/> - <expand macro="keras_layer_types_Convolutional"/> - <expand macro="keras_layer_types_Pooling"/> - <expand macro="keras_layer_types_locally_connected"/> - <expand macro="keras_layer_types_recurrent"/> - <expand macro="keras_layer_types_merge"/> - <expand macro="keras_layer_types_embedding"/> - <expand macro="keras_layer_types_advanced_activations"/> - <expand macro="keras_layer_types_normalization"/> - <expand macro="keras_layer_types_noise"/> - </param> - <when value="Input"> - <expand macro="layer_Input"/> - </when> - <when value="Dense"> - <expand macro="layer_Dense"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Activation"> - <expand macro="keras_activations"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Dropout"> - <expand macro="layer_Dropout"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Flatten"> - <expand macro="layer_Flatten"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Reshape"> - <expand macro="layer_Reshape"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Permute"> - <expand macro="layer_Permute"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="RepeatVector"> - <expand macro="layer_RepeatVector"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ActivityRegularization"> - <expand macro="layer_ActivityRegularization"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Masking"> - <expand macro="layer_Masking"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SpatialDropout1D"> - <expand macro="layer_SpatialDropout1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SpatialDropout2D"> - <expand macro="layer_SpatialDropout2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SpatialDropout3D"> - <expand macro="layer_SpatialDropout3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Conv1D"> - <expand macro="layer_Conv1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Conv2D"> - <expand macro="layer_Conv2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SeparableConv1D"> - <expand macro="layer_SeparableConv1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SeparableConv2D"> - <expand macro="layer_SeparableConv2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="DepthwiseConv2D"> - <expand macro="layer_DepthwiseConv2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Conv2DTranspose"> - <expand macro="layer_Conv2DTranspose"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Conv3D"> - <expand macro="layer_Conv3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Conv3DTranspose"> - <expand macro="layer_Conv3DTranspose"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Cropping1D"> - <expand macro="layer_Cropping1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Cropping2D"> - <expand macro="layer_Cropping2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Cropping3D"> - <expand macro="layer_Cropping3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="UpSampling1D"> - <expand macro="layer_UpSampling1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="UpSampling2D"> - <expand macro="layer_UpSampling2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="UpSampling3D"> - <expand macro="layer_UpSampling3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ZeroPadding1D"> - <expand macro="layer_ZeroPadding1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ZeroPadding2D"> - <expand macro="layer_ZeroPadding2D"> - <expand macro="inbound_nodes_index"/> - </expand> + <when value="sequential"> + <param argument="input_shape" type="text" value="(32, )" optional="true" label="input_shape" help="Tuple of integers or None. Required for the first layer." /> + <repeat name="layers" min="1" max="500" title="LAYER"> + <conditional name="layer_selection"> + <param name="layer_type" type="select" label="Choose the type of layer"> + <expand macro="keras_layer_types_core" /> + <expand macro="keras_layer_types_Convolutional" /> + <expand macro="keras_layer_types_Pooling" /> + <expand macro="keras_layer_types_locally_connected" /> + <expand macro="keras_layer_types_recurrent" /> + <expand macro="keras_layer_types_embedding" /> + <expand macro="keras_layer_types_advanced_activations" /> + <expand macro="keras_layer_types_normalization" /> + <expand macro="keras_layer_types_noise" /> + </param> + <when value="Dense"> + <expand macro="layer_Dense" /> + </when> + <when value="Activation"> + <expand macro="keras_activations" /> + </when> + <when value="Dropout"> + <expand macro="layer_Dropout" /> + </when> + <when value="Flatten"> + <expand macro="layer_Flatten" /> + </when> + <when value="Reshape"> + <expand macro="layer_Reshape" /> + </when> + <when value="Permute"> + <expand macro="layer_Permute" /> + </when> + <when value="RepeatVector"> + <expand macro="layer_RepeatVector" /> + </when> + <when value="ActivityRegularization"> + <expand macro="layer_ActivityRegularization" /> + </when> + <when value="Masking"> + <expand macro="layer_Masking" /> + </when> + <when value="SpatialDropout1D"> + <expand macro="layer_SpatialDropout1D" /> + </when> + <when value="SpatialDropout2D"> + <expand macro="layer_SpatialDropout2D" /> + </when> + <when value="SpatialDropout3D"> + <expand macro="layer_SpatialDropout3D" /> + </when> + <when value="Conv1D"> + <expand macro="layer_Conv1D" /> + </when> + <when value="Conv2D"> + <expand macro="layer_Conv2D" /> + </when> + <when value="SeparableConv1D"> + <expand macro="layer_SeparableConv1D" /> + </when> + <when value="SeparableConv2D"> + <expand macro="layer_SeparableConv2D" /> + </when> + <when value="DepthwiseConv2D"> + <expand macro="layer_DepthwiseConv2D" /> + </when> + <when value="Conv2DTranspose"> + <expand macro="layer_Conv2DTranspose" /> + </when> + <when value="Conv3D"> + <expand macro="layer_Conv3D" /> + </when> + <when value="Conv3DTranspose"> + <expand macro="layer_Conv3DTranspose" /> + </when> + <when value="Cropping1D"> + <expand macro="layer_Cropping1D" /> + </when> + <when value="Cropping2D"> + <expand macro="layer_Cropping2D" /> + </when> + <when value="Cropping3D"> + <expand macro="layer_Cropping3D" /> + </when> + <when value="UpSampling1D"> + <expand macro="layer_UpSampling1D" /> + </when> + <when value="UpSampling2D"> + <expand macro="layer_UpSampling2D" /> + </when> + <when value="UpSampling3D"> + <expand macro="layer_UpSampling3D" /> + </when> + <when value="ZeroPadding1D"> + <expand macro="layer_ZeroPadding1D" /> + </when> + <when value="ZeroPadding2D"> + <expand macro="layer_ZeroPadding2D" /> + </when> + <when value="ZeroPadding3D"> + <expand macro="layer_ZeroPadding3D" /> + </when> + <when value="MaxPooling1D"> + <expand macro="layer_MaxPooling1D" /> + </when> + <when value="MaxPooling2D"> + <expand macro="layer_MaxPooling2D" /> + </when> + <when value="MaxPooling3D"> + <expand macro="layer_MaxPooling3D" /> + </when> + <when value="AveragePooling1D"> + <expand macro="layer_AveragePooling1D" /> + </when> + <when value="AveragePooling2D"> + <expand macro="layer_AveragePooling2D" /> + </when> + <when value="AveragePooling3D"> + <expand macro="layer_AveragePooling3D" /> + </when> + <when value="GlobalMaxPooling1D"> + <expand macro="layer_GlobalMaxPooling1D" /> + </when> + <when value="GlobalAveragePooling1D"> + <expand macro="layer_GlobalAveragePooling1D" /> + </when> + <when value="GlobalMaxPooling2D"> + <expand macro="layer_GlobalMaxPooling2D" /> + </when> + <when value="GlobalAveragePooling2D"> + <expand macro="layer_GlobalAveragePooling2D" /> + </when> + <when value="GlobalMaxPooling3D"> + <expand macro="layer_GlobalMaxPooling3D" /> + </when> + <when value="GlobalAveragePooling3D"> + <expand macro="layer_GlobalAveragePooling3D" /> + </when> + <when value="LocallyConnected1D"> + <expand macro="layer_LocallyConnected1D" /> + </when> + <when value="LocallyConnected2D"> + <expand macro="layer_LocallyConnected2D" /> + </when> + <when value="SimpleRNN"> + <expand macro="layer_SimpleRNN" /> + </when> + <when value="GRU"> + <expand macro="layer_GRU" /> + </when> + <when value="LSTM"> + <expand macro="layer_LSTM" /> + </when> + <when value="ConvLSTM2D"> + <expand macro="layer_ConvLSTM2D" /> + </when> + <when value="ConvLSTM2DCell"> + <expand macro="layer_ConvLSTM2DCell" /> + </when> + <when value="SimpleRNNCell"> + <expand macro="layer_SimpleRNNCell" /> + </when> + <when value="GRUCell"> + <expand macro="layer_GRUCell" /> + </when> + <when value="LSTMCell"> + <expand macro="layer_LSTMCell" /> + </when> + <when value="CuDNNGRU"> + <expand macro="layer_CuDNNGRU" /> + </when> + <when value="CuDNNLSTM"> + <expand macro="layer_CuDNNLSTM" /> + </when> + <when value="Embedding"> + <expand macro="layer_Embedding" /> + </when> + <when value="LeakyReLU"> + <expand macro="layer_LeakyReLU" /> + </when> + <when value="PReLU"> + <expand macro="layer_PReLU" /> + </when> + <when value="ELU"> + <expand macro="layer_ELU" /> + </when> + <when value="ThresholdedReLU"> + <expand macro="layer_ThresholdedReLU" /> + </when> + <when value="Softmax"> + <expand macro="layer_Softmax" /> + </when> + <when value="ReLU"> + <expand macro="layer_ReLU" /> + </when> + <when value="BatchNormalization"> + <expand macro="layer_BatchNormalization" /> + </when> + <when value="GaussianNoise"> + <expand macro="layer_GaussianNoise" /> + </when> + <when value="GaussianDropout"> + <expand macro="layer_GaussianDropout" /> + </when> + <when value="AlphaDropout"> + <expand macro="layer_AlphaDropout" /> + </when> + </conditional> + </repeat> </when> - <when value="ZeroPadding3D"> - <expand macro="layer_ZeroPadding3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="MaxPooling1D"> - <expand macro="layer_MaxPooling1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="MaxPooling2D"> - <expand macro="layer_MaxPooling2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="MaxPooling3D"> - <expand macro="layer_MaxPooling3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="AveragePooling1D"> - <expand macro="layer_AveragePooling1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="AveragePooling2D"> - <expand macro="layer_AveragePooling2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="AveragePooling3D"> - <expand macro="layer_AveragePooling3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalMaxPooling1D"> - <expand macro="layer_GlobalMaxPooling1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalAveragePooling1D"> - <expand macro="layer_GlobalAveragePooling1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalMaxPooling2D"> - <expand macro="layer_GlobalMaxPooling2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalAveragePooling2D"> - <expand macro="layer_GlobalAveragePooling2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalMaxPooling3D"> - <expand macro="layer_GlobalMaxPooling3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GlobalAveragePooling3D"> - <expand macro="layer_GlobalAveragePooling3D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="LocallyConnected1D"> - <expand macro="layer_LocallyConnected1D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="LocallyConnected2D"> - <expand macro="layer_LocallyConnected2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SimpleRNN"> - <expand macro="layer_SimpleRNN"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GRU"> - <expand macro="layer_GRU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="LSTM"> - <expand macro="layer_LSTM"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ConvLSTM2D"> - <expand macro="layer_ConvLSTM2D"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ConvLSTM2DCell"> - <expand macro="layer_ConvLSTM2DCell"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="SimpleRNNCell"> - <expand macro="layer_SimpleRNNCell"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GRUCell"> - <expand macro="layer_GRUCell"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="LSTMCell"> - <expand macro="layer_LSTMCell"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="CuDNNGRU"> - <expand macro="layer_CuDNNGRU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="CuDNNLSTM"> - <expand macro="layer_CuDNNLSTM"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Add"> - <expand macro="layer_merge"/> - </when> - <when value="Subtract"> - <expand macro="layer_merge"/> - </when> - <when value="Multiply"> - <expand macro="layer_merge"/> - </when> - <when value="Average"> - <expand macro="layer_merge"/> - </when> - <when value="Maximum"> - <expand macro="layer_merge"/> - </when> - <when value="Minimum"> - <expand macro="layer_merge"/> - </when> - <when value="Concatenate"> - <expand macro="layer_Concatenate"/> - </when> - <when value="Dot"> - <expand macro="layer_Dot"/> - </when> - <when value="Embedding"> - <expand macro="layer_Embedding"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="LeakyReLU"> - <expand macro="layer_LeakyReLU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="PReLU"> - <expand macro="layer_PReLU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ELU"> - <expand macro="layer_ELU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ThresholdedReLU"> - <expand macro="layer_ThresholdedReLU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="Softmax"> - <expand macro="layer_Softmax"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="ReLU"> - <expand macro="layer_ReLU"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="BatchNormalization"> - <expand macro="layer_BatchNormalization"> - <expand macro="inbound_nodes_index"/> - </expand> + <when value="functional"> + <repeat name="layers" min="1" max="500" title="LAYER"> + <conditional name="layer_selection"> + <param name="layer_type" type="select" label="Choose the type of layer"> + <option value="Input">Input</option> + <expand macro="keras_layer_types_core" /> + <expand macro="keras_layer_types_Convolutional" /> + <expand macro="keras_layer_types_Pooling" /> + <expand macro="keras_layer_types_locally_connected" /> + <expand macro="keras_layer_types_recurrent" /> + <expand macro="keras_layer_types_merge" /> + <expand macro="keras_layer_types_embedding" /> + <expand macro="keras_layer_types_advanced_activations" /> + <expand macro="keras_layer_types_normalization" /> + <expand macro="keras_layer_types_noise" /> + </param> + <when value="Input"> + <expand macro="layer_Input" /> + </when> + <when value="Dense"> + <expand macro="layer_Dense"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Activation"> + <expand macro="keras_activations"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Dropout"> + <expand macro="layer_Dropout"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Flatten"> + <expand macro="layer_Flatten"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Reshape"> + <expand macro="layer_Reshape"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Permute"> + <expand macro="layer_Permute"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="RepeatVector"> + <expand macro="layer_RepeatVector"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ActivityRegularization"> + <expand macro="layer_ActivityRegularization"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Masking"> + <expand macro="layer_Masking"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SpatialDropout1D"> + <expand macro="layer_SpatialDropout1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SpatialDropout2D"> + <expand macro="layer_SpatialDropout2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SpatialDropout3D"> + <expand macro="layer_SpatialDropout3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Conv1D"> + <expand macro="layer_Conv1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Conv2D"> + <expand macro="layer_Conv2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SeparableConv1D"> + <expand macro="layer_SeparableConv1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SeparableConv2D"> + <expand macro="layer_SeparableConv2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="DepthwiseConv2D"> + <expand macro="layer_DepthwiseConv2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Conv2DTranspose"> + <expand macro="layer_Conv2DTranspose"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Conv3D"> + <expand macro="layer_Conv3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Conv3DTranspose"> + <expand macro="layer_Conv3DTranspose"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Cropping1D"> + <expand macro="layer_Cropping1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Cropping2D"> + <expand macro="layer_Cropping2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Cropping3D"> + <expand macro="layer_Cropping3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="UpSampling1D"> + <expand macro="layer_UpSampling1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="UpSampling2D"> + <expand macro="layer_UpSampling2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="UpSampling3D"> + <expand macro="layer_UpSampling3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ZeroPadding1D"> + <expand macro="layer_ZeroPadding1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ZeroPadding2D"> + <expand macro="layer_ZeroPadding2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ZeroPadding3D"> + <expand macro="layer_ZeroPadding3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="MaxPooling1D"> + <expand macro="layer_MaxPooling1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="MaxPooling2D"> + <expand macro="layer_MaxPooling2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="MaxPooling3D"> + <expand macro="layer_MaxPooling3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="AveragePooling1D"> + <expand macro="layer_AveragePooling1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="AveragePooling2D"> + <expand macro="layer_AveragePooling2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="AveragePooling3D"> + <expand macro="layer_AveragePooling3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalMaxPooling1D"> + <expand macro="layer_GlobalMaxPooling1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalAveragePooling1D"> + <expand macro="layer_GlobalAveragePooling1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalMaxPooling2D"> + <expand macro="layer_GlobalMaxPooling2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalAveragePooling2D"> + <expand macro="layer_GlobalAveragePooling2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalMaxPooling3D"> + <expand macro="layer_GlobalMaxPooling3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GlobalAveragePooling3D"> + <expand macro="layer_GlobalAveragePooling3D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="LocallyConnected1D"> + <expand macro="layer_LocallyConnected1D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="LocallyConnected2D"> + <expand macro="layer_LocallyConnected2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SimpleRNN"> + <expand macro="layer_SimpleRNN"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GRU"> + <expand macro="layer_GRU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="LSTM"> + <expand macro="layer_LSTM"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ConvLSTM2D"> + <expand macro="layer_ConvLSTM2D"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ConvLSTM2DCell"> + <expand macro="layer_ConvLSTM2DCell"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="SimpleRNNCell"> + <expand macro="layer_SimpleRNNCell"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GRUCell"> + <expand macro="layer_GRUCell"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="LSTMCell"> + <expand macro="layer_LSTMCell"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="CuDNNGRU"> + <expand macro="layer_CuDNNGRU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="CuDNNLSTM"> + <expand macro="layer_CuDNNLSTM"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Add"> + <expand macro="layer_merge" /> + </when> + <when value="Subtract"> + <expand macro="layer_merge" /> + </when> + <when value="Multiply"> + <expand macro="layer_merge" /> + </when> + <when value="Average"> + <expand macro="layer_merge" /> + </when> + <when value="Maximum"> + <expand macro="layer_merge" /> + </when> + <when value="Minimum"> + <expand macro="layer_merge" /> + </when> + <when value="Concatenate"> + <expand macro="layer_Concatenate" /> + </when> + <when value="Dot"> + <expand macro="layer_Dot" /> + </when> + <when value="Embedding"> + <expand macro="layer_Embedding"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="LeakyReLU"> + <expand macro="layer_LeakyReLU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="PReLU"> + <expand macro="layer_PReLU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ELU"> + <expand macro="layer_ELU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ThresholdedReLU"> + <expand macro="layer_ThresholdedReLU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="Softmax"> + <expand macro="layer_Softmax"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="ReLU"> + <expand macro="layer_ReLU"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="BatchNormalization"> + <expand macro="layer_BatchNormalization"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GaussianNoise"> + <expand macro="layer_GaussianNoise"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="GaussianDropout"> + <expand macro="layer_GaussianDropout"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + <when value="AlphaDropout"> + <expand macro="layer_AlphaDropout"> + <expand macro="inbound_nodes_index" /> + </expand> + </when> + </conditional> + </repeat> + <param name="input_layers" type="text" value="[]" label="Type the list of input layer indexes" help="List of integers. Find index number at the left top corner of layer configuration block."> + <sanitizer> + <valid initial="default"> + <add value="[" /> + <add value="]" /> + </valid> + </sanitizer> + </param> + <param name="output_layers" type="text" value="[]" label="Type the list of output layer indexes" help="List of integers. Find index number at the left top corner of layer configuration block."> + <sanitizer> + <valid initial="default"> + <add value="[" /> + <add value="]" /> + </valid> + </sanitizer> + </param> </when> - <when value="GaussianNoise"> - <expand macro="layer_GaussianNoise"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="GaussianDropout"> - <expand macro="layer_GaussianDropout"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - <when value="AlphaDropout"> - <expand macro="layer_AlphaDropout"> - <expand macro="inbound_nodes_index"/> - </expand> - </when> - </conditional> - </repeat> - <param name="input_layers" type="text" value="[]" label="Type the list of input layer indexes" - help="List of integers. Find index number at the left top corner of layer configuration block."> - <sanitizer> - <valid initial="default"> - <add value="["/> - <add value="]"/> - </valid> - </sanitizer> - </param> - <param name="output_layers" type="text" value="[]" label="Type the list of output layer indexes" - help="List of integers. Find index number at the left top corner of layer configuration block."> - <sanitizer> - <valid initial="default"> - <add value="["/> - <add value="]"/> - </valid> - </sanitizer> - </param> - </when> - </conditional> - </inputs> - <outputs> - <data format="json" name="outfile" label="Keras Model Config"/> - </outputs> - <tests> - <test> - <conditional name="model_selection"> - <param name="model_type" value="sequential"/> - <param name="input_shape" value="(784, )"/> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="32"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Activation"/> - <param name="activation" value="relu"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="10"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Activation"/> - <param name="activation" value="softmax"/> - </conditional> - </repeat> - </conditional> - <output name="outfile" file="keras01.json"/> - </test> - <test> - <conditional name="model_selection"> - <param name="model_type" value="functional"/> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Input"/> - <param name="shape" value="(100, )" /> - <param name="name" value="main_input"/> - <param name="dtype" value="int32"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Embedding"/> - <param name="input_dim" value="10000"/> - <param name="output_dim" value="512"/> - <param name="kwargs" value="input_length=100"/> - <param name="inbound_nodes" value="1"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="LSTM"/> - <param name="units" value="32"/> - <param name="inbound_nodes" value="2"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="1"/> - <param name="activation" value="sigmoid"/> - <param name="inbound_nodes" value="3"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Input"/> - <param name="shape" value="(5, )" /> - <param name="name" value="aux_input"/> - <param name="dtype" value="float32"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Concatenate"/> - <param name="merging_layers" value="[4, 5]"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="64"/> - <param name="activation" value="relu"/> - <param name="inbound_nodes" value="6"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="64"/> - <param name="activation" value="relu"/> - <param name="inbound_nodes" value="7"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="64"/> - <param name="activation" value="relu"/> - <param name="inbound_nodes" value="8"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="1"/> - <param name="activation" value="sigmoid"/> - <param name="inbound_nodes" value="9"/> - </conditional> - </repeat> - <param name="input_layers" value="[1, 5]"/> - <param name="output_layers" value="[4, 10]"/> - </conditional> - <output name="outfile" file="keras02.json"/> - </test> - <test> - <conditional name="model_selection"> - <param name="model_type" value="sequential"/> - <param name="input_shape" value="(17, )"/> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="32"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Activation"/> - <param name="activation" value="linear"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Dense"/> - <param name="units" value="1"/> - </conditional> - </repeat> - <repeat name="layers"> - <conditional name="layer_selection"> - <param name="layer_type" value="Activation"/> - <param name="activation" value="linear"/> - </conditional> - </repeat> - </conditional> - <output name="outfile" file="keras04.json"/> - </test> - </tests> - <help> - <![CDATA[ + </conditional> + </inputs> + <outputs> + <data format="json" name="outfile" label="Keras Model Config" /> + </outputs> + <tests> + <test> + <conditional name="model_selection"> + <param name="model_type" value="sequential" /> + <param name="input_shape" value="(784, )" /> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="32" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Activation" /> + <param name="activation" value="relu" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="10" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Activation" /> + <param name="activation" value="softmax" /> + </conditional> + </repeat> + </conditional> + <output name="outfile" file="keras01.json" /> + </test> + <test> + <conditional name="model_selection"> + <param name="model_type" value="functional" /> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Input" /> + <param name="shape" value="(100, )" /> + <param name="name" value="main_input" /> + <param name="dtype" value="int32" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Embedding" /> + <param name="input_dim" value="10000" /> + <param name="output_dim" value="512" /> + <param name="kwargs" value="input_length=100" /> + <param name="inbound_nodes" value="1" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="LSTM" /> + <param name="units" value="32" /> + <param name="inbound_nodes" value="2" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="1" /> + <param name="activation" value="sigmoid" /> + <param name="inbound_nodes" value="3" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Input" /> + <param name="shape" value="(5, )" /> + <param name="name" value="aux_input" /> + <param name="dtype" value="float32" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Concatenate" /> + <param name="merging_layers" value="[4, 5]" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="64" /> + <param name="activation" value="relu" /> + <param name="inbound_nodes" value="6" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="64" /> + <param name="activation" value="relu" /> + <param name="inbound_nodes" value="7" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="64" /> + <param name="activation" value="relu" /> + <param name="inbound_nodes" value="8" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="1" /> + <param name="activation" value="sigmoid" /> + <param name="inbound_nodes" value="9" /> + </conditional> + </repeat> + <param name="input_layers" value="[1, 5]" /> + <param name="output_layers" value="[4, 10]" /> + </conditional> + <output name="outfile" file="keras02.json" /> + </test> + <test> + <conditional name="model_selection"> + <param name="model_type" value="sequential" /> + <param name="input_shape" value="(17, )" /> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="32" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Activation" /> + <param name="activation" value="linear" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Dense" /> + <param name="units" value="1" /> + </conditional> + </repeat> + <repeat name="layers"> + <conditional name="layer_selection"> + <param name="layer_type" value="Activation" /> + <param name="activation" value="linear" /> + </conditional> + </repeat> + </conditional> + <output name="outfile" file="keras04.json" /> + </test> + </tests> + <help> + <![CDATA[ **Help** **What it does** @@ -794,9 +792,9 @@ ]]> - </help> - <citations> - <expand macro="keras_citation"/> - <expand macro="tensorflow_citation"/> - </citations> + </help> + <citations> + <expand macro="keras_citation" /> + <expand macro="tensorflow_citation" /> + </citations> </tool>