Mercurial > repos > bgruening > keras_model_config
diff test-data/keras02.json @ 5:c3813c64d678 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
| author | bgruening |
|---|---|
| date | Mon, 16 Dec 2019 05:32:49 -0500 |
| parents | 0fd7d8e90e2a |
| children | 6eb4e7fb0f91 |
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--- a/test-data/keras02.json Thu Nov 07 05:38:41 2019 -0500 +++ b/test-data/keras02.json Mon Dec 16 05:32:49 2019 -0500 @@ -1,1 +1,385 @@ -{"class_name": "Model", "config": {"name": "model_1", "layers": [{"name": "main_input", "class_name": "InputLayer", "config": {"batch_input_shape": [null, 100], "dtype": "int32", "sparse": false, "name": "main_input"}, "inbound_nodes": []}, {"name": "embedding_1", "class_name": "Embedding", "config": {"name": "embedding_1", "trainable": true, "batch_input_shape": [null, 100], "dtype": "float32", "input_dim": 10000, "output_dim": 512, "embeddings_initializer": {"class_name": "RandomUniform", "config": {"minval": -0.05, "maxval": 0.05, "seed": null}}, "embeddings_regularizer": null, "activity_regularizer": null, "embeddings_constraint": null, "mask_zero": false, "input_length": 100}, "inbound_nodes": [[["main_input", 0, 0, {}]]]}, {"name": "lstm_1", "class_name": "LSTM", "config": {"name": "lstm_1", "trainable": true, "return_sequences": false, "return_state": false, "go_backwards": false, "stateful": false, "unroll": false, "units": 32, "activation": "tanh", "recurrent_activation": "hard_sigmoid", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "recurrent_initializer": {"class_name": "Orthogonal", "config": {"gain": 1.0, "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "unit_forget_bias": true, "kernel_regularizer": null, "recurrent_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "recurrent_constraint": null, "bias_constraint": null, "dropout": 0.0, "recurrent_dropout": 0.0, "implementation": 1}, "inbound_nodes": [[["embedding_1", 0, 0, {}]]]}, {"name": "dense_1", "class_name": "Dense", "config": {"name": "dense_1", "trainable": true, "units": 1, "activation": "sigmoid", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "inbound_nodes": [[["lstm_1", 0, 0, {}]]]}, {"name": "aux_input", "class_name": "InputLayer", "config": {"batch_input_shape": [null, 5], "dtype": "float32", "sparse": false, "name": "aux_input"}, "inbound_nodes": []}, {"name": "concatenate_1", "class_name": "Concatenate", "config": {"name": "concatenate_1", "trainable": true, "axis": -1}, "inbound_nodes": [[["dense_1", 0, 0, {}], ["aux_input", 0, 0, {}]]]}, {"name": "dense_2", "class_name": "Dense", "config": {"name": "dense_2", "trainable": true, "units": 64, "activation": "relu", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "inbound_nodes": [[["concatenate_1", 0, 0, {}]]]}, {"name": "dense_3", "class_name": "Dense", "config": {"name": "dense_3", "trainable": true, "units": 64, "activation": "relu", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "inbound_nodes": [[["dense_2", 0, 0, {}]]]}, {"name": "dense_4", "class_name": "Dense", "config": {"name": "dense_4", "trainable": true, "units": 64, "activation": "relu", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "inbound_nodes": [[["dense_3", 0, 0, {}]]]}, {"name": "dense_5", "class_name": "Dense", "config": {"name": "dense_5", "trainable": true, "units": 1, "activation": "sigmoid", "use_bias": true, "kernel_initializer": {"class_name": "VarianceScaling", "config": {"scale": 1.0, "mode": "fan_avg", "distribution": "uniform", "seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": null, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "inbound_nodes": [[["dense_4", 0, 0, {}]]]}], "input_layers": [["main_input", 0, 0], ["aux_input", 0, 0]], "output_layers": [["dense_1", 0, 0], ["dense_5", 0, 0]]}, "keras_version": "2.2.4", "backend": "tensorflow"} \ No newline at end of file +{ + "class_name": "Model", + "config": { + "name": "model_1", + "layers": [ + { + "name": "main_input", + "class_name": "InputLayer", + "config": { + "batch_input_shape": [ + null, + 100 + ], + "dtype": "int32", + "sparse": false, + "name": "main_input" + }, + "inbound_nodes": [] + }, + { + "name": "embedding_1", + "class_name": "Embedding", + "config": { + "name": "embedding_1", + "trainable": true, + "batch_input_shape": [ + null, + 100 + ], + "dtype": "float32", + "input_dim": 10000, + "output_dim": 512, + "embeddings_initializer": { + "class_name": "RandomUniform", + "config": { + "minval": -0.05, + "maxval": 0.05, + "seed": null + } + }, + "embeddings_regularizer": null, + "activity_regularizer": null, + "embeddings_constraint": null, + "mask_zero": false, + "input_length": 100 + }, + "inbound_nodes": [ + [ + [ + "main_input", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "lstm_1", + "class_name": "LSTM", + "config": { + "name": "lstm_1", + "trainable": true, + "dtype": "float32", + "return_sequences": false, + "return_state": false, + "go_backwards": false, + "stateful": false, + "unroll": false, + "units": 32, + "activation": "tanh", + "recurrent_activation": "sigmoid", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "recurrent_initializer": { + "class_name": "Orthogonal", + "config": { + "gain": 1.0, + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "unit_forget_bias": true, + "kernel_regularizer": null, + "recurrent_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "recurrent_constraint": null, + "bias_constraint": null, + "dropout": 0.0, + "recurrent_dropout": 0.0, + "implementation": 2 + }, + "inbound_nodes": [ + [ + [ + "embedding_1", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "dense_1", + "class_name": "Dense", + "config": { + "name": "dense_1", + "trainable": true, + "dtype": "float32", + "units": 1, + "activation": "sigmoid", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "kernel_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "bias_constraint": null + }, + "inbound_nodes": [ + [ + [ + "lstm_1", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "aux_input", + "class_name": "InputLayer", + "config": { + "batch_input_shape": [ + null, + 5 + ], + "dtype": "float32", + "sparse": false, + "name": "aux_input" + }, + "inbound_nodes": [] + }, + { + "name": "concatenate_1", + "class_name": "Concatenate", + "config": { + "name": "concatenate_1", + "trainable": true, + "dtype": "float32", + "axis": -1 + }, + "inbound_nodes": [ + [ + [ + "dense_1", + 0, + 0, + {} + ], + [ + "aux_input", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "dense_2", + "class_name": "Dense", + "config": { + "name": "dense_2", + "trainable": true, + "dtype": "float32", + "units": 64, + "activation": "relu", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "kernel_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "bias_constraint": null + }, + "inbound_nodes": [ + [ + [ + "concatenate_1", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "dense_3", + "class_name": "Dense", + "config": { + "name": "dense_3", + "trainable": true, + "dtype": "float32", + "units": 64, + "activation": "relu", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "kernel_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "bias_constraint": null + }, + "inbound_nodes": [ + [ + [ + "dense_2", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "dense_4", + "class_name": "Dense", + "config": { + "name": "dense_4", + "trainable": true, + "dtype": "float32", + "units": 64, + "activation": "relu", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "kernel_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "bias_constraint": null + }, + "inbound_nodes": [ + [ + [ + "dense_3", + 0, + 0, + {} + ] + ] + ] + }, + { + "name": "dense_5", + "class_name": "Dense", + "config": { + "name": "dense_5", + "trainable": true, + "dtype": "float32", + "units": 1, + "activation": "sigmoid", + "use_bias": true, + "kernel_initializer": { + "class_name": "VarianceScaling", + "config": { + "scale": 1.0, + "mode": "fan_avg", + "distribution": "uniform", + "seed": null + } + }, + "bias_initializer": { + "class_name": "Zeros", + "config": {} + }, + "kernel_regularizer": null, + "bias_regularizer": null, + "activity_regularizer": null, + "kernel_constraint": null, + "bias_constraint": null + }, + "inbound_nodes": [ + [ + [ + "dense_4", + 0, + 0, + {} + ] + ] + ] + } + ], + "input_layers": [ + [ + "main_input", + 0, + 0 + ], + [ + "aux_input", + 0, + 0 + ] + ], + "output_layers": [ + [ + "dense_1", + 0, + 0 + ], + [ + "dense_5", + 0, + 0 + ] + ] + }, + "keras_version": "2.3.1", + "backend": "tensorflow" +} \ No newline at end of file