Mercurial > repos > bgruening > ml_visualization_ex

changeset 11:e88c782a127d draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d970dae980fbe349414fc0889f719d875d999c5b"
author bgruening
date Fri, 27 Aug 2021 09:50:40 +0000
parents 4a229a7ad638
children 947c2eacccb8
files main_macros.xml
diffstat 1 files changed, 31 insertions(+), 26 deletions(-) [+]
line wrap: on
line diff
--- a/main_macros.xml	Sat May 01 01:49:25 2021 +0000
+++ b/main_macros.xml	Fri Aug 27 09:50:40 2021 +0000
@@ -1921,11 +1921,19 @@
 
     <xml name="sklearn_citation">
         <citations>
+            <citation type="doi">10.1371/journal.pcbi.1009014</citation>
             <citation type="bibtex">
-          @article{scikit-learn, title={Scikit-learn: Machine Learning in {P}ython}, author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V.
-                    and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P.
-                    and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and
-                    Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, journal={Journal of Machine Learning Research}, volume={12}, pages={2825--2830}, year={2011}
+          @article{JMLR:v12:pedregosa11a,
+            title   = {Scikit-learn: Machine Learning in {P}ython},
+            author  = {Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V.
+                       and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P.
+                       and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and
+                       Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.},
+            journal = {Journal of Machine Learning Research},
+            volume  = {12},
+            pages   = {2825--2830},
+            year    = {2011}
+            url     = {http://jmlr.org/papers/v12/pedregosa11a.html}
           }
             </citation>
             <yield />
@@ -1936,11 +1944,11 @@
         <citations>
             <citation type="bibtex">
           @Misc{,
-          author =    {Eric Jones and Travis Oliphant and Pearu Peterson and others},
-          title =     {{SciPy}: Open source scientific tools for {Python}},
-          year =      {2001--},
-          url = "http://www.scipy.org/",
-          note = {[Online; accessed 2016-04-09]}
+            author = {Eric Jones and Travis Oliphant and Pearu Peterson and others},
+            title  = {{SciPy}: Open source scientific tools for {Python}},
+            year   = {2001--},
+            url    = {http://www.scipy.org/},
+            note   = {[Online; accessed 2016-04-09]}
         }
             </citation>
         </citations>
@@ -1971,21 +1979,21 @@
     <xml name="xgboost_citation">
         <citation type="bibtex">
       @inproceedings{Chen:2016:XST:2939672.2939785,
-        author = {Chen, Tianqi and Guestrin, Carlos},
-        title = {{XGBoost}: A Scalable Tree Boosting System},
+        author    = {Chen, Tianqi and Guestrin, Carlos},
+        title     = {{XGBoost}: A Scalable Tree Boosting System},
         booktitle = {Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining},
-        series = {KDD '16},
-        year = {2016},
-        isbn = {978-1-4503-4232-2},
-        location = {San Francisco, California, USA},
-        pages = {785--794},
-        numpages = {10},
-        url = {http://doi.acm.org/10.1145/2939672.2939785},
-        doi = {10.1145/2939672.2939785},
-        acmid = {2939785},
+        series    = {KDD '16},
+        year      = {2016},
+        isbn      = {978-1-4503-4232-2},
+        location  = {San Francisco, California, USA},
+        pages     = {785--794},
+        numpages  = {10},
+        url       = {http://doi.acm.org/10.1145/2939672.2939785},
+        doi       = {10.1145/2939672.2939785},
+        acmid     = {2939785},
         publisher = {ACM},
-        address = {New York, NY, USA},
-        keywords = {large-scale machine learning},
+        address   = {New York, NY, USA},
+        keywords  = {large-scale machine learning},
       }
         </citation>
     </xml>
@@ -2006,10 +2014,7 @@
     </xml>
 
     <xml name="selene_citation">
-        <citation type="bibtex">
-      @article{chen2019selene, title={Selene: a PyTorch-based deep learning library for sequence data}, author={Chen, Kathleen M and Cofer, Evan M and Zhou, Jian and Troyanskaya, Olga G}, journal={Nature methods}, volume={16}, number={4}, pages={315}, year={2019}, publisher={Nature Publishing Group}
-      }
-        </citation>
+        <citation type="doi">10.1038/s41592-019-0360-8</citation>
     </xml>
 
 </macros>