Mercurial > repos > bgruening > music_deconvolution

comparison music_deconvolution.xml @ 9:8cd2ecfa2e61 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit 7b4e1e85d9d288a904444eb9fcb96bcdc856b9ff
author bgruening
date Wed, 06 Nov 2024 23:21:38 +0000
parents 2ba99a52bd44
children
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8:e7b79fd6b595 9:8cd2ecfa2e61
2 profile="21.09" license="GPL-3.0-or-later" > 2 profile="21.09" license="GPL-3.0-or-later" >
3 <description>estimate cell type proportions in bulk RNA-seq data</description> 3 <description>estimate cell type proportions in bulk RNA-seq data</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="xrefs"/>
7 <expand macro="requirements" /> 8 <expand macro="requirements" />
8 <command detect_errors="exit_code" ><![CDATA[ 9 <command detect_errors="exit_code" ><![CDATA[
9 cat '$conf' >> /dev/stderr && 10 cat '$conf' >> /dev/stderr &&
10 mkdir report_data && 11 mkdir report_data &&
11 Rscript --vanilla '$__tool_directory__/scripts/${do.method}.R' '$conf' 12 Rscript --vanilla '$__tool_directory__/scripts/${do.method}.R' '$conf'