Mercurial > repos > bgruening > music_deconvolution
view scripts/inspect.R @ 0:224721e76869 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit 08c6fd3885bdfbf8b5c3f4dcc2d04729b577e3e1"
author | bgruening |
---|---|
date | Sun, 12 Sep 2021 19:48:48 +0000 |
parents | |
children | 3ca0132c182a |
line wrap: on
line source
suppressWarnings(suppressPackageStartupMessages(library(xbioc))) suppressWarnings(suppressPackageStartupMessages(library(MuSiC))) args <- commandArgs(trailingOnly = TRUE) source(args[1]) printout <- function(text) { if (typeof(text) %in% c("list", "vector")) { write.table(text, file = outfile_tab, quote = F, sep = "\t", col.names = NA) } else { ## text capture.output(text, file = outfile_tab) # nolint } } if (inspector %in% c("print", "pData", "fData", "dims", "experimentData", "exprs", "signature", "annotation", "abstract")) { op <- get(inspector) tab <- op(rds_eset) printout(tab) } else { stop(paste0("No such option:", inspector)) }