Mercurial > repos > bgruening > nanopolish_eventalign
diff nanopolish_eventalign.xml @ 6:855b7ba0ce9c draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 4883f9a9a2779e2b4792314bd6128c7c109c00e1"
| author | bgruening |
|---|---|
| date | Fri, 07 May 2021 06:49:26 +0000 |
| parents | 8fdb079ddaf0 |
| children | 3b6f94fc7e1d |
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--- a/nanopolish_eventalign.xml Fri May 29 13:29:43 2020 -0400 +++ b/nanopolish_eventalign.xml Fri May 07 06:49:26 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="@VERSION@+galaxy0"> +<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="@VERSION@+galaxy1"> <description>- Align nanopore events to reference k-mers</description> <macros> <import>macros.xml</import> @@ -49,6 +49,7 @@ --threads "\${GALAXY_SLOTS:-4}" $samples $scale_events + $signal_index $sam $print_read_names #if $w and str($w).strip(): @@ -110,6 +111,10 @@ label="Write the raw samples for the event to the tsv output" /> <param name="scale_events" argument="--scale-events" type="boolean" truevalue="--scale-events" falsevalue="" checked="false" label="Scale events to the model, rather than vice-versa" /> + <param name="signal_index" argument="--signal-index" type="boolean" truevalue="--signal-index" falsevalue="" checked="false" + label="write the raw signal start and end index values for the event to the tsv output" /> + + <param argument="--sam" type="boolean" truevalue="--sam" falsevalue="" checked="false" label="write output in SAM format" /> <param name="print_read_names" argument="--print-read-names" type="boolean" truevalue="--print-read-names" falsevalue="" checked="false"