Mercurial > repos > bgruening > nanopolish_methylation
diff nanopolish_methylation.xml @ 4:a8d4be409446 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 25c22b467760e4784e199125292927bd2274a189-dirty
| author | bgruening |
|---|---|
| date | Sun, 23 Jun 2019 05:54:36 -0400 |
| parents | 02e3c674d917 |
| children | 12efe2f03697 |
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--- a/nanopolish_methylation.xml Wed Jun 19 03:45:24 2019 -0400 +++ b/nanopolish_methylation.xml Sun Jun 23 05:54:36 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="nanopolish_methylation" name="Nanopolish methylation" version="0.1.0"> +<tool id="nanopolish_methylation" name="Nanopolish methylation" version="0.11.1"> <description>- Classify nucleotides as methylated or not.</description> <macros> <import>macros.xml</import> @@ -55,7 +55,7 @@ <inputs> <!-- index inputs --> <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/> - <param type="data" name="input_reads_raw" format="h5,fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/> + <param type="data" name="input_reads_raw" format="fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/> <!-- variants consensus inputs --> <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" /> @@ -105,8 +105,8 @@ <test> <param name="input_merged" ftype="fasta" value="reads.fasta" /> <param name="input_reads_raw" ftype="fast5.tar.gz" value="fast5_files.tar.gz" /> - <param name="reference_source_selector" value="cached" /> - <param name="ref_file" value="draft"/> + <param name="reference_source_selector" value="history" /> + <param name="ref_file" value="draft.fa"/> <param name="b" value="reads.sorted.bam" /> <param name="w" value="tig00000001:200000-202000" /> <param name="batchsize" value="512" />