Mercurial > repos > bgruening > nanopolish_methylation

diff macros.xml @ 0:f9dadc362197 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 0e94011a4ea84bf4ae5c2079680a37540e022625
author bgruening
date Wed, 30 May 2018 11:55:55 -0400
parents
children 709490665bad
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed May 30 11:55:55 2018 -0400
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+<macros>
+    <xml name="requirements">
+        <requirements>
+        <requirement type="package" version="0.9.0">nanopolish</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+
+<!--        index outputs 
+        <data name="output_index" format="nanopolish_index" from_work_dir="reads.fasta.index"  />
+        <data name="output_index_fai" format="nanopolish_index_fai" from_work_dir="reads.fasta.index.fai"  />
+        <data name="output_index_gzi" format="nanopolish_index_gzi" from_work_dir="reads.fasta.index.gzi"  />
+        <data name="output_index_readdb" format="nanopolish_index_readdb" from_work_dir="reads.fasta.index.readdb"  />
+ -->      
+<!--      <output name="output_index" file="reads.fasta.index" />
+            <output name="output_index_fai" file="reads.fasta.index.fai" />
+            <output name="output_index_gzi" file="reads.fasta.index.gzi" />
+            <output name="output_index_readdb" file="reads.fasta.index.readdb" />
+ -->
+
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1038/nmeth.4184</citation>
+            <citation type="bibtex">
+@misc{githubnanopolish,
+  author = {LastTODO, FirstTODO},
+  year = {TODO},
+  title = {nanopolish},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/jts/nanopolish},
+}</citation>
+            <yield />
+        </citations>
+    </xml>
+</macros>
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