Mercurial > repos > bgruening > nanopolish_polya

comparison nanopolish_polya.xml @ 1:449e9aeded2d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 25c22b467760e4784e199125292927bd2274a189-dirty
author bgruening
date Sun, 23 Jun 2019 05:45:17 -0400
parents 7739a9b0dd83
children be717b65851f
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0:7739a9b0dd83 1:449e9aeded2d
1 <tool id="nanopolish_polya" name="Nanopolish polyA" version="0.1.0"> 1 <tool id="nanopolish_polya" name="Nanopolish polyA" version="0.11.1">
2 <description>- Estimate the length of the poly-A tail on direct RNA reads.</description> 2 <description>- Estimate the length of the poly-A tail on direct RNA reads.</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
50 > polya_results.tsv 50 > polya_results.tsv
51 ]]></command> 51 ]]></command>
52 <inputs> 52 <inputs>
53 <!-- index inputs --> 53 <!-- index inputs -->
54 <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/> 54 <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/>
55 <param type="data" name="input_reads_raw" format="h5,fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/> 55 <param type="data" name="input_reads_raw" format="fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/>
56 56
57 <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" /> 57 <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" />
58 <conditional name="reference_source"> 58 <conditional name="reference_source">
59 <param name="reference_source_selector" type="select" label="Load reference genome from"> 59 <param name="reference_source_selector" type="select" label="Load reference genome from">
60 <option value="cached">Local cache</option> 60 <option value="cached">Local cache</option>