<macros>
    <xml name="requirements">
        <requirements>
        <requirement type="package" version="0.9.0">nanopolish</requirement>
            <yield/>
        </requirements>
    </xml>

<!--        index outputs 
        <data name="output_index" format="nanopolish_index" from_work_dir="reads.fasta.index"  />
        <data name="output_index_fai" format="nanopolish_index_fai" from_work_dir="reads.fasta.index.fai"  />
        <data name="output_index_gzi" format="nanopolish_index_gzi" from_work_dir="reads.fasta.index.gzi"  />
        <data name="output_index_readdb" format="nanopolish_index_readdb" from_work_dir="reads.fasta.index.readdb"  />
 -->      
<!--      <output name="output_index" file="reads.fasta.index" />
            <output name="output_index_fai" file="reads.fasta.index.fai" />
            <output name="output_index_gzi" file="reads.fasta.index.gzi" />
            <output name="output_index_readdb" file="reads.fasta.index.readdb" />
 -->

    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/nmeth.4184</citation>
            <citation type="bibtex">
@misc{githubnanopolish,
  author = {LastTODO, FirstTODO},
  year = {TODO},
  title = {nanopolish},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/jts/nanopolish},
}</citation>
            <yield />
        </citations>
    </xml>
</macros>