Mercurial > repos > bgruening > nanopolish_variants
view test-data/t2-variants.vcf @ 8:bec636361cfd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit de2370d1a385731b3c65f1dcc44e7b8558da8fd4
author | bgruening |
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date | Thu, 30 Nov 2023 17:57:59 +0000 |
parents | 63af3144371a |
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##fileformat=VCFv4.2 ##nanopolish_window=tig00000001:198000-202000 ##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant"> ##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant"> ##INFO=<ID=SupportFractionByStrand,Number=2,Type=Float,Description="Fraction of event-space reads that support the variant for each strand"> ##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant"> ##INFO=<ID=BaseCalledFraction,Number=1,Type=Float,Description="The fraction of base-space reads that support the variant"> ##INFO=<ID=AlleleCount,Number=1,Type=Integer,Description="The inferred number of copies of the allele"> ##INFO=<ID=StrandSupport,Number=4,Type=Integer,Description="Number of reads supporting the REF and ALT allele, by strand"> ##INFO=<ID=StrandFisherTest,Number=1,Type=Integer,Description="Strand bias fisher test"> ##INFO=<ID=SOR,Number=1,Type=Float,Description="StrandOddsRatio test from GATK"> ##INFO=<ID=RefContext,Number=1,Type=String,Description="The reference sequence context surrounding the variant call"> ##INFO=<ID=SupportFractionByBase,Number=4,Type=Float,Description="The fraction of reads supporting A,C,G,T at this position"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample