Mercurial > repos > bgruening > nanopolish_variants
changeset 7:a3afc5f0a96c draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 23969530e590419a54d93156c5791e75a94a3837"
| author | bgruening |
|---|---|
| date | Fri, 30 Jul 2021 06:29:50 +0000 |
| parents | 3185b305255a |
| children | bec636361cfd |
| files | test-data/all_fasta.loc test-data/all_fasta.loc.test tool-data/all_fasta.loc.sample |
| diffstat | 3 files changed, 20 insertions(+), 1 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_fasta.loc Fri Jul 30 06:29:50 2021 +0000 @@ -0,0 +1,1 @@ +draft draft draft ${__HERE__}/draft.fa \ No newline at end of file
--- a/test-data/all_fasta.loc.test Fri May 07 06:48:43 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -draft draft draft ${__HERE__}/draft.fa \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Fri Jul 30 06:29:50 2021 +0000 @@ -0,0 +1,19 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. This file has the format (white space characters are +#TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +# +#Your all_fasta.loc file should contain an entry for each individual +#fasta file. So there will be multiple fasta files for each build, +#such as with hg19 above. +# +#Arabidopsis_thaliana Arabidopsis_thaliana_TAIR10 Arabidopsis_thaliana: TAIR 10 /export/home1/users/biocomp/chbernar/galaxy_testing/tool-data/from_personal_data/Fasta/TAIR10.fa