annotate macros.xml @ 5:a5021af1bab2 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 81bccfe3545098dc46a377102816e7fae642c95f
author bgruening
date Wed, 03 Jan 2018 13:11:13 -0500
parents 5c3c1c132f9f
children c8d8caa9a54d
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1 <macros>
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2 <token name="@VERSION@">2.4.1</token>
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4 <xml name="requirements">
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5 <requirements>
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6 <requirement type="package" version="2.4.1">openbabel</requirement>
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7 <yield />
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8 </requirements>
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9 </xml>
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11 <xml name="output_like_input">
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12 <data name="outfile" format_source="infile" />
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13 </xml>
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15 <xml name="infile_all_types">
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16 <param name="infile" format="sdf,mol,mol2,cml,inchi,smi,pdb" type="data" label="Molecular input file"
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17 help="Valid file types are: SDF, MOL, MOL2, CML, InChI, SMILES, and PDB"/>
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18 </xml>
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20 <xml name="2D_3D_opts">
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21 <param name="gen2d" type="boolean" truevalue="--gen2d" falsevalue="" checked="false"
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22 label="Generate 2D coordinates" help="(--gen2d)" />
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23 <param name="gen3d" type="boolean" truevalue="--gen3d" falsevalue="" checked="false"
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24 label="Generate 3D coordinates" help="(--gen3d)" />
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25 </xml>
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27 <xml name="stdio">
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28 <stdio>
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29 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
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30 </stdio>
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31 </xml>
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33 <xml name="citations">
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34 <citations>
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35 <citation type="doi">10.1186/1758-2946-3-33</citation>
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36 <yield />
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37 </citations>
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38 </xml>
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39 </macros>
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