Mercurial > repos > bgruening > openbabel_svg_depiction

diff ob_depiction_svg.xml @ 15:75ee9c410951 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit d9c51279c061a1da948a2582d5b502ca7573adbf
author bgruening
date Thu, 15 Aug 2024 11:02:03 +0000
parents d3b48303045b
children
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--- a/ob_depiction_svg.xml	Tue Nov 10 20:40:46 2020 +0000
+++ b/ob_depiction_svg.xml	Thu Aug 15 11:02:03 2024 +0000
@@ -2,7 +2,7 @@
     <description>of compounds</description>
     <macros>
         <import>macros.xml</import>
-        <token name="@GALAXY_VERSION@">0</token>
+        <token name="@GALAXY_VERSION@">1</token>
     </macros>
     <expand macro="requirements"/>
     <command detect_errors="aggressive">
@@ -50,7 +50,6 @@
             <option value='logP'>Octanol/water partition coefficient</option>
             <option value='MR'>Molar refractivity</option>
             <option value='nF'>Number of fluorine atoms</option>
-            <option value='s'>SMARTS filter</option>
             <option value='sbonds'>Number of single bonds</option>
             <option value='smarts'>SMARTS filter</option>
             <option value='tbonds'>Number of triple bonds</option>
@@ -106,8 +105,8 @@
 
 Creates an SVG or PNG image of a small set of molecules (not more than a few hundred). Based on Open Babel PNG_/SVG_ 2D depiction. Note that PNG is a poor choice for representing more than one molecule, as resolution will be low.
 
-.. _PNG: http://openbabel.org/docs/dev/FileFormats/PNG_2D_depiction.html
-.. _SVG: http://openbabel.org/docs/dev/FileFormats/SVG_2D_depiction.html
+.. _PNG: https://open-babel.readthedocs.io/en/latest/FileFormats/PNG_2D_depiction.html
+.. _SVG: https://open-babel.readthedocs.io/en/latest/FileFormats/SVG_2D_depiction.html
 
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