Mercurial > repos > bgruening > pharmcat
diff test-data/test_2.json @ 0:d67642a21a1d draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
| author | bgruening |
|---|---|
| date | Fri, 28 Jan 2022 21:18:23 +0000 |
| parents | |
| children | 891283e0ee89 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_2.json Fri Jan 28 21:18:23 2022 +0000 @@ -0,0 +1,2867 @@ +{ + "metadata": { + "namedAlleleMatcherVersion": "1.0.0", + "genomeBuild": "GRCh38.p13", + "inputFilename": "input.vcf", + "timestamp": "Jan 27, 2022, 11:53:07 PM" + }, + "results": [ + { + "alleleDefinitionVersion": "01/10/22", + "chromosome": "chr1", + "gene": "CACNA1S", + "diplotypes": [ + { + "name": "Reference/Reference", + "haplotype1": { + "name": "Reference", + "sequences": [ + "201060815:C;201091993:G;" + ] + }, + "haplotype2": { + "name": "Reference", + "sequences": [ + "201060815:C;201091993:G;" + ] + }, + "score": 4 + } + ], + "haplotypes": [ + { + "name": "Reference", + "sequences": [ + "201060815:C;201091993:G;" + ] + } + ], + "phased": true, + "variants": [ + { + "position": 201060815, + "rsid": "rs1800559", + "vcfCall": "C|C" + }, + { + "position": 201091993, + "rsid": "rs772226819", + "vcfCall": "G|G" + } + ], + "variantsOfInterest": [], + 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"38440802:T;38440829:C;38444211:C;38444212:G;38446710:G;38448673:C;38448712:G;38451842:C;38451850:C;38455359:A;38455463:G;38455471:C;38455472:G;38455528:C;38457545:C;38457546:G;38494564:C;38494565:G;38494579:G;38496283:C;38499223:G;38499644:TGGA;38499655:G;38499670:C;38499731:G;38499975:G;38499993:G;38499997:G;38500636:C;38500642:C;38500643:G;38500654:C;38500655:G;38500898:C;38500899:G;38512321:G;38543832:G;38580004:A;38580094:C;38580114:C;38580370:C;38580403:G;38580440:G;38584989:T;" + ] + }, + "haplotype2": { + "name": "Reference", + "sequences": [ + "38440802:T;38440829:C;38444211:C;38444212:G;38446710:G;38448673:C;38448712:G;38451842:C;38451850:C;38455359:A;38455463:G;38455471:C;38455472:G;38455528:C;38457545:C;38457546:G;38494564:C;38494565:G;38494579:G;38496283:C;38499223:G;38499644:TGGA;38499655:G;38499670:C;38499731:G;38499975:G;38499993:G;38499997:G;38500636:C;38500642:C;38500643:G;38500654:C;38500655:G;38500898:C;38500899:G;38512321:G;38543832:G;38580004:A;38580094:C;38580114:C;38580370:C;38580403:G;38580440:G;38584989:T;" + ] + }, + "score": 88 + } + ], + "haplotypes": [ + { + "name": "Reference", + "sequences": [ + "38440802:T;38440829:C;38444211:C;38444212:G;38446710:G;38448673:C;38448712:G;38451842:C;38451850:C;38455359:A;38455463:G;38455471:C;38455472:G;38455528:C;38457545:C;38457546:G;38494564:C;38494565:G;38494579:G;38496283:C;38499223:G;38499644:TGGA;38499655:G;38499670:C;38499731:G;38499975:G;38499993:G;38499997:G;38500636:C;38500642:C;38500643:G;38500654:C;38500655:G;38500898:C;38500899:G;38512321:G;38543832:G;38580004:A;38580094:C;38580114:C;38580370:C;38580403:G;38580440:G;38584989:T;" + ] + } + ], + "phased": true, + "variants": [ + { + "position": 38440802, + "rsid": "rs193922747", + "vcfCall": "T|T" + }, + { + "position": 38440829, + "rsid": "rs193922748", + "vcfCall": "C|C" + }, + { + "position": 38444211, + "rsid": "rs118192161", + "vcfCall": "C|C" + }, + { + "position": 38444212, + "rsid": "rs193922753", + "vcfCall": "G|G" + }, + { + "position": 38446710, + "rsid": "rs1801086", + "vcfCall": "G|G" + }, + { + "position": 38448673, + "rsid": "rs193922762", + "vcfCall": "C|C" + }, + { 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