view test-data/test.vcf @ 1:891283e0ee89 draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
author bgruening
date Thu, 05 May 2022 20:27:17 +0000
parents d67642a21a1d
children
line wrap: on
line source

##fileformat=VCFv4.2
##source=PharmCAT allele definitions
##fileDate=2021-10-06T01:19:28.8631026-07:00
##contig=<ID=chr1,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr2,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr6,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr7,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr10,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr12,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr13,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr16,assembly=GRCh38.p13,species="Homo sapiens">
##contig=<ID=chr19,assembly=GRCh38.p13,species="Homo sapiens">
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=PX,Number=.,Type=String,Description="Gene">
##INFO=<ID=POI,Number=0,Type=Flag,Description="Position of Interest but not part of an allele definition">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	PharmCAT
chr1	97078987	rs114096998	G	T	.	PASS	PX=DPYD	GT	0/0
chr1	97078993	rs148799944	C	G	.	PASS	PX=DPYD	GT	0/0
chr1	97079005	rs140114515	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97079071	rs1801268	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97079076	rs139459586	A	C	.	PASS	PX=DPYD	GT	0/0
chr1	97079077	rs202144771	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97079121	rs72547601	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97079133	rs72547602	T	A	.	PASS	PX=DPYD	GT	0/0
chr1	97079139	rs145529148	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97082365	rs141044036	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97082391	rs67376798	T	A	.	PASS	PX=DPYD	GT	0/0
chr1	97098598	rs1801267	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97098599	rs147545709	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97098616	rs55674432	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97098632	rs201035051	T	G	.	PASS	PX=DPYD	GT	0/0
chr1	97193109	rs60139309	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97193209	rs200687447	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97234958	rs199634007	G	T	.	PASS	PX=DPYD	GT	0/0
chr1	97234991	rs56005131	G	T	.	PASS	PX=DPYD	GT	0/0
chr1	97305279	rs112766203	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97305363	rs60511679	A	C	.	PASS	PX=DPYD	GT	0/0
chr1	97305364	rs1801160	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97305372	rs146529561	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97306195	rs145548112	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97373598	rs137999090	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97373629	rs138545885	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97382461	rs55971861	T	G	.	PASS	PX=DPYD	GT	0/0
chr1	97450058	rs3918290	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97450059	rs3918289	G	C	.	PASS	PX=DPYD	GT	0/0
chr1	97450065	rs72549303	TG	T	.	PASS	PX=DPYD	GT	0/0
chr1	97450068	rs17376848	A	G	.	PASS	PX=DPYD	GT	0/0
chr1	97450168	rs147601618	A	G	.	PASS	PX=DPYD	GT	0/0
chr1	97450187	rs145773863	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97450189	rs138616379	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97450190	rs59086055	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97515784	rs201615754	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97515787	rs55886062	A	C	.	PASS	PX=DPYD	GT	0/0
chr1	97515839	rs1801159	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97515851	rs142619737	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97515865	rs1801158	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97515889	rs190951787	G	C	.	PASS	PX=DPYD	GT	0/0
chr1	97515923	rs148994843	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97549565	rs138391898	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97549600	rs111858276	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97549609	rs72549304	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97549681	rs199549923	G	T	.	PASS	PX=DPYD	GT	0/0
chr1	97549713	rs57918000	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97549726	rs144395748	G	C	.	PASS	PX=DPYD	GT	0/0
chr1	97549735	rs72975710	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97573785	rs186169810	A	C	.	PASS	PX=DPYD	GT	0/0
chr1	97573805	rs142512579	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97573821	rs764666241	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97573839	rs200064537	A	T	.	PASS	PX=DPYD	GT	0/0
chr1	97573863	rs56038477	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97573881	rs61622928	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97573918	rs143815742	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97573919	rs140602333	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97573943	rs78060119	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97579893	rs75017182	G	C	.	PASS	PX=DPYD	GT	0/0
chr1	97593238	rs72549305	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97593289	rs143154602	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97593322	rs183385770	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97593343	rs72549306	C	A	.	PASS	PX=DPYD	GT	0/0
chr1	97593379	rs201018345	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97595083	rs145112791	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97595088	rs150437414	A	G	.	PASS	PX=DPYD	GT	0/0
chr1	97595149	rs146356975	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97679170	rs45589337	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97691776	rs1801266	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97699399	rs72549307	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97699430	rs72549308	T	G	.	PASS	PX=DPYD	GT	0/0
chr1	97699474	rs115232898	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97699506	rs6670886	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97699533	rs139834141	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97699535	rs2297595	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97721542	rs200562975	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97721650	rs141462178	T	C	.	PASS	PX=DPYD	GT	0/0
chr1	97740400	rs150385342	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97740410	rs72549309	GATGA	G	.	PASS	PX=DPYD	GT	0/0
chr1	97883329	rs1801265	A	G	.	PASS	PX=DPYD	GT	0/0
chr1	97883352	rs80081766	C	T	.	PASS	PX=DPYD	GT	0/0
chr1	97883353	rs72549310	G	A	.	PASS	PX=DPYD	GT	0/0
chr1	97883368	rs150036960	G	C	.	PASS	PX=DPYD	GT	0/0
chr1	201060815	rs1800559	C	T	.	PASS	PX=CACNA1S	GT	0/0
chr1	201091993	rs772226819	G	A	.	PASS	PX=CACNA1S	GT	0/0
chr2	233759924	rs887829	C	T	.	PASS	PX=UGT1A1	GT	0/0
chr2	233760233	rs3064744	CAT	C,CATAT,CATATAT	.	PASS	PX=UGT1A1	GT	0/0
chr2	233760498	rs4148323	G	A	.	PASS	PX=UGT1A1	GT	0/0
chr2	233760973	rs35350960	C	A	.	PASS	PX=UGT1A1	GT	0/0
chr6	18130687	rs1142345	T	C,G	.	PASS	PX=TPMT	GT	0/0
chr6	18130694	rs150900439	T	C	.	PASS	PX=TPMT	GT	0/0
chr6	18130725	rs72552736	A	C	.	PASS	PX=TPMT	GT	0/0
chr6	18130729	rs139392616	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18130758	rs398122996	A	T	.	PASS	PX=TPMT	GT	0/0
chr6	18130762	rs56161402	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18130772	rs377085266	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18130781	rs1800584	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18132136	rs72556347	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18132147	rs79901429	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18132163	.	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18133845	rs75543815	T	A	.	PASS	PX=TPMT	GT	0/0
chr6	18133847	rs6921269	C	A	.	PASS	PX=TPMT	GT	0/0
chr6	18133870	rs772832951	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18133884	rs74423290	G	C	.	PASS	PX=TPMT	GT	0/0
chr6	18133887	rs201695576	T	C	.	PASS	PX=TPMT	GT	0/0
chr6	18133890	rs9333570	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18138969	rs144041067	C	G,T	.	PASS	PX=TPMT	GT	0/0
chr6	18138970	rs112339338	G	A	.	PASS	PX=TPMT	GT	0/0
chr6	18138997	rs1800460	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18139027	rs72552737	C	G	.	PASS	PX=TPMT	GT	0/0
chr6	18139689	rs72552738	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18139710	rs200220210	G	A	.	PASS	PX=TPMT	GT	0/0
chr6	18143597	.	T	G	.	PASS	PX=TPMT	GT	0/0
chr6	18143606	rs151149760	T	G	.	PASS	PX=TPMT	GT	0/0
chr6	18143613	.	C	G	.	PASS	PX=TPMT	GT	0/0
chr6	18143622	rs115106679	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18143643	.	A	C	.	PASS	PX=TPMT	GT	0/0
chr6	18143700	rs753545734	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18143718	rs111901354	G	A	.	PASS	PX=TPMT	GT	0/0
chr6	18143724	rs1800462	C	G	.	PASS	PX=TPMT	GT	0/0
chr6	18143728	rs1256618794	C	A	.	PASS	PX=TPMT	GT	0/0
chr6	18147838	rs281874771	G	A	.	PASS	PX=TPMT	GT	0/0
chr6	18147845	rs777686348	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18147851	rs200591577	G	C	.	PASS	PX=TPMT	GT	0/0
chr6	18147856	.	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18147910	rs72552740	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18149004	.	G	C	.	PASS	PX=TPMT	GT	0/0
chr6	18149022	rs750424422	C	T	.	PASS	PX=TPMT	GT	0/0
chr6	18149032	rs759836180	C	CT	.	PASS	PX=TPMT	GT	0/0
chr6	18149045	rs72552742	T	A	.	PASS	PX=TPMT	GT	0/0
chr6	18149126	rs267607275	A	G	.	PASS	PX=TPMT	GT	0/0
chr6	18149127	rs9333569	T	C	.	PASS	PX=TPMT	GT	0/0
chr7	99652613	rs28365083	G	T	.	PASS	PX=CYP3A5	GT	0/0
chr7	99652770	rs41303343	T	TA	.	PASS	PX=CYP3A5	GT	0/0
chr7	99660516	rs28383479	C	T	.	PASS	PX=CYP3A5	GT	0/0
chr7	99665212	rs10264272	C	T	.	PASS	PX=CYP3A5	GT	0/0
chr7	99665237	rs56411402	T	C	.	PASS	PX=CYP3A5	GT	0/0
chr7	99666950	rs55965422	A	G	.	PASS	PX=CYP3A5	GT	0/0
chr7	99672916	rs776746	T	C	.	PASS	PX=CYP3A5	GT	0/0
chr7	99676198	rs55817950	G	A	.	PASS	PX=CYP3A5	GT	0/0
chr7	117509035	rs397508256	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117509069	rs368505753	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117509089	rs115545701	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117530953	rs113993958	G	C	.	PASS	PX=CFTR	GT	0/0
chr7	117530955	rs397508537	C	A	.	PASS	PX=CFTR	GT	0/0
chr7	117530974	rs77834169	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117530975	rs78655421	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117534318	rs80282562	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117534363	rs397508759	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117534368	rs397508761	A	G	.	PASS	PX=CFTR	GT	0/0
chr7	117535285	rs121908752	T	G	.	PASS	PX=CFTR	GT	0/0
chr7	117540270	rs77932196	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117540285	rs121908753	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117548795	rs74551128	C	A	.	PASS	PX=CFTR	GT	0/0
chr7	117587799	rs121908757	A	C	.	PASS	PX=CFTR	GT	0/0
chr7	117587800	rs121908755	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117587801	rs121909005	T	G	.	PASS	PX=CFTR	GT	0/0
chr7	117587805	rs121909013	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117587806	rs75527207	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117590409	rs397508288	A	G	.	PASS	PX=CFTR	GT	0/0
chr7	117594930	rs397508387	G	T	.	PASS	PX=CFTR	GT	0/0
chr7	117602868	rs80224560	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117603708	rs397508442	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117606695	rs141033578	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117611555	rs76151804	A	G	.	PASS	PX=CFTR	GT	0/0
chr7	117611595	rs150212784	T	G	.	PASS	PX=CFTR	GT	0/0
chr7	117611620	rs397508513	A	C	.	PASS	PX=CFTR	GT	0/0
chr7	117611640	rs121909020	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117611646	rs200321110	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117611649	rs202179988	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117611650	rs78769542	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117611663	rs186045772	T	A	.	PASS	PX=CFTR	GT	0/0
chr7	117614699	rs75541969	G	C	.	PASS	PX=CFTR	GT	0/0
chr7	117639961	rs75039782	C	T	.	PASS	PX=CFTR	GT	0/0
chr7	117642451	rs267606723	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117642472	rs74503330	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117642483	rs121909041	T	C	.	PASS	PX=CFTR	GT	0/0
chr7	117642528	rs11971167	G	A	.	PASS	PX=CFTR	GT	0/0
chr7	117664770	rs193922525	G	A	.	PASS	PX=CFTR	GT	0/0
chr10	94645745	rs12777823	G	A	.	PASS	POI	GT	0/0
chr10	94761900	rs12248560	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762706	rs28399504	A	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762712	rs367543002	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762715	rs367543003	T	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762755	rs55752064	T	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762760	rs17882687	A	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762788	rs1564656981	A	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94762856	rs1564657013	A	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775106	rs145328984	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775121	rs1564660997	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775160	rs118203756	G	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775185	rs1288601658	A	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775367	rs12769205	A	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775416	rs41291556	T	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775423	rs17885179	A	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775453	rs72552267	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775489	rs17884712	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94775507	rs58973490	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94780574	rs140278421	G	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94780579	rs370803989	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94780653	rs4986893	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94781858	rs6413438	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94781859	rs4244285	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94781944	rs375781227	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94781999	rs72558186	T	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94842861	rs138142612	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94842866	rs3758581	A	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94842879	rs118203757	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94842995	rs113934938	G	A	.	PASS	PX=CYP2C19	GT	0/0
chr10	94849995	rs17879685	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94852738	rs56337013	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94852765	rs192154563	C	T	.	PASS	PX=CYP2C19	GT	0/0
chr10	94852785	rs118203759	C	G	.	PASS	PX=CYP2C19	GT	0/0
chr10	94852914	rs55640102	A	C	.	PASS	PX=CYP2C19	GT	0/0
chr10	94938683	rs114071557	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94938737	rs67807361	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94938771	rs142240658	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94938803	rs2031308986	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94938828	rs564813580	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94941897	rs371055887	G	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94941915	.	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94941958	rs72558187	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94941976	.	G	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94941982	rs762239445	G	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942018	.	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942205	rs1304490498	CAATGGAAAGA	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942216	rs774607211	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942230	rs767576260	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942231	rs12414460	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942233	rs375805362	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942234	rs72558189	G	A,T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942249	rs200965026	C	G,T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942254	rs199523631	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942255	rs200183364	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942290	rs1799853	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942291	rs141489852	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942305	rs754487195	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94942309	rs7900194	G	A,T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947782	rs72558190	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947785	rs774550549	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947869	.	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947907	.	A	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947917	rs1326630788	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94947938	rs2031531005	A	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94949129	.	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94949144	.	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94949217	rs2256871	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94949280	rs9332130	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94949281	rs9332131	GA	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972119	rs182132442	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972123	.	C	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972134	.	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972179	rs72558192	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972180	rs988617574	C	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94972233	rs1237225311	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981199	.	G	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981201	rs57505750	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981224	rs28371685	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981225	rs367826293	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981230	rs1274535931	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981250	rs750820937	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981281	rs749060448	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981296	rs1057910	A	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981297	rs56165452	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981301	rs28371686	C	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981302	rs1250577724	C	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981305	rs578144976	C	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981365	.	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94981371	rs542577750	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94986042	rs764211126	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94986073	rs72558193	A	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988852	rs776908257	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988855	.	A	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988880	.	G	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988917	rs769942899	G	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988925	rs202201137	A	G	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988955	rs767284820	T	C	.	PASS	PX=CYP2C9	GT	0/0
chr10	94988984	rs781583846	G	A	.	PASS	PX=CYP2C9	GT	0/0
chr10	94989020	rs9332239	C	T	.	PASS	PX=CYP2C9	GT	0/0
chr10	94989023	rs868182778	G	T	.	PASS	PX=CYP2C9	GT	0/0
chr12	21130388	rs4149015	G	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21172734	rs139257324	C	T	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21172776	rs373327528	G	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21172782	rs56101265	T	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21174595	rs56061388	T	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21176804	rs2306283	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21176827	rs11045818	G	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21176868	rs2306282	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21176879	rs11045819	C	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21176883	rs72559745	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21178615	rs4149056	T	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21178665	rs4149057	T	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21178672	rs72559746	T	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21178691	rs2291075	C	T	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21178957	rs79135870	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21196951	rs11045852	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21196976	rs11045853	G	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21200595	rs55901008	T	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21202553	.	T	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21202555	rs59113707	C	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21202649	rs56387224	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21202664	rs142965323	G	A	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21205921	rs72559748	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21205999	rs59502379	G	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21239042	rs34671512	A	C	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21239077	rs56199088	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21239113	rs55737008	A	G	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21239145	rs200995543	C	T	.	PASS	PX=SLCO1B1	GT	0/0
chr12	21239158	rs140790673	C	T	.	PASS	PX=SLCO1B1	GT	0/0
chr13	48037748	rs769369441	T	C	.	PASS	PX=NUDT15	GT	0/0
chr13	48037749	.	G	C	.	PASS	PX=NUDT15	GT	0/0
chr13	48037782	rs746071566	AGGAGTC	A,AGGAGTCGGAGTC	.	PASS	PX=NUDT15	GT	0/0
chr13	48037798	rs186364861	G	A	.	PASS	PX=NUDT15	GT	0/0
chr13	48037825	rs777311140	C	CGCGG	.	PASS	PX=NUDT15	GT	0/0
chr13	48037834	rs1202487323	C	T	.	PASS	PX=NUDT15	GT	0/0
chr13	48037847	rs766023281	G	C	.	PASS	PX=NUDT15	GT	0/0
chr13	48037849	.	A	G	.	PASS	PX=NUDT15	GT	0/0
chr13	48037885	rs1950545307	G	A	.	PASS	PX=NUDT15	GT	0/0
chr13	48037902	rs149436418	C	G	.	PASS	PX=NUDT15	GT	0/0
chr13	48040977	rs1457579126	GA	G	.	PASS	PX=NUDT15	GT	0/0
chr13	48041103	rs761191455	T	TG	.	PASS	PX=NUDT15	GT	0/0
chr13	48041113	rs1368252918	G	T	.	PASS	PX=NUDT15	GT	0/0
chr13	48045690	rs768324690	C	G	.	PASS	PX=NUDT15	GT	0/0
chr13	48045719	rs116855232	C	T	.	PASS	PX=NUDT15	GT	0/0
chr13	48045720	rs147390019	G	A	.	PASS	PX=NUDT15	GT	0/0
chr13	48045771	rs139551410	T	A	.	PASS	PX=NUDT15	GT	0/0
chr16	31096368	rs9923231	C	T	.	PASS	PX=VKORC1	GT	0/0
chr19	15879621	rs2108622	C	T	.	PASS	PX=CYP4F2	GT	0/0
chr19	15897578	rs3093105	A	C	.	PASS	PX=CYP4F2	GT	0/0
chr19	38440802	rs193922747	T	C	.	PASS	PX=RYR1	GT	0/0
chr19	38440829	rs193922748	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38444211	rs118192161	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38444212	rs193922753	G	T	.	PASS	PX=RYR1	GT	0/0
chr19	38446710	rs1801086	G	A,C	.	PASS	PX=RYR1	GT	0/0
chr19	38448673	rs193922762	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38448712	rs121918592	G	A,C	.	PASS	PX=RYR1	GT	0/0
chr19	38451842	rs193922764	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38451850	rs118192116	C	G	.	PASS	PX=RYR1	GT	0/0
chr19	38455359	rs118192162	A	C	.	PASS	PX=RYR1	GT	0/0
chr19	38455463	rs111888148	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38455471	rs193922768	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38455472	rs144336148	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38455528	rs193922770	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38457545	rs118192172	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38457546	rs193922772	G	T	.	PASS	PX=RYR1	GT	0/0
chr19	38494564	rs118192175	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38494565	rs118192163	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38494579	rs118192176	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38496283	rs118192177	C	G,T	.	PASS	PX=RYR1	GT	0/0
chr19	38499223	rs112563513	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38499644	rs121918596	TGGA	T	.	PASS	PX=RYR1	GT	0/0
chr19	38499655	rs193922802	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38499670	rs193922803	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38499731	rs193922807	G	C	.	PASS	PX=RYR1	GT	0/0
chr19	38499975	rs193922809	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38499993	rs121918593	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38499997	rs28933396	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38500636	rs118192124	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38500642	rs193922816	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38500643	rs118192122	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38500654	rs28933397	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38500655	rs121918594	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38500898	rs118192178	C	G,T	.	PASS	PX=RYR1	GT	0/0
chr19	38500899	rs193922818	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38512321	rs193922832	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38543832	rs193922843	G	T	.	PASS	PX=RYR1	GT	0/0
chr19	38580004	rs118192167	A	G	.	PASS	PX=RYR1	GT	0/0
chr19	38580094	rs121918595	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38580114	rs193922876	C	T	.	PASS	PX=RYR1	GT	0/0
chr19	38580370	rs193922878	C	G	.	PASS	PX=RYR1	GT	0/0
chr19	38580403	rs118192168	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38580440	rs63749869	G	A	.	PASS	PX=RYR1	GT	0/0
chr19	38584989	rs118192170	T	C	.	PASS	PX=RYR1	GT	0/0
chr19	39248147	rs12979860	C	T	.	PASS	PX=IFNL3	GT	0/0
chr19	40991224	rs34223104	T	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991367	rs34883432	A	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991369	rs8192709	C	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991381	rs33973337	A	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991388	rs33980385	A	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991390	rs33926104	C	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991391	rs34284776	G	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	40991441	rs35303484	A	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004015	rs281864907	T	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004125	rs36060847	G	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004158	rs186335453	G	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004303	rs139801276	T	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004377	rs12721655	A	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004381	rs35773040	G	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41004406	rs145884402	G	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41006919	rs3826711	C	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41006923	rs36056539	C	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41006936	rs3745274	G	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41006968	rs373489637	T	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41007013	rs36079186	T	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	41009350	rs45482602	C	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41009358	rs2279343	A	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41010006	rs139029625	G	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	41010088	rs34698757	C	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41010108	rs193922917	C	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012316	rs28399499	T	C	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012339	rs34826503	C	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012465	rs34097093	C	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012693	rs35979566	T	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012740	rs193922918	G	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41012803	rs35010098	C	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41016726	rs3211369	A	G	.	PASS	PX=CYP2B6	GT	0/0
chr19	41016778	rs564083989	G	A	.	PASS	PX=CYP2B6	GT	0/0
chr19	41016805	.	A	T	.	PASS	PX=CYP2B6	GT	0/0
chr19	41016810	rs3211371	C	A,T	.	PASS	PX=CYP2B6	GT	0/0