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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
author bgruening
date Fri, 28 Jan 2022 21:18:23 +0000
parents
children 891283e0ee89
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[
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        "wildtypeAllele": "A",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
        "position": 94645745,
        "dbSnpId": "rs12777823",
        "call": "G|G",
        "alleles": [],
        "phased": false,
        "wildtypeAllele": null,
        "mismatch": false
      }
    ],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "CYP3A5",
    "chr": "chr7",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "CYP3A5 reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "CYP3A5",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The CYP3A5 gene is on the negative chromosomal strand, all genotype calls for CYP3A5 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "CYP3A5",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "CYP3A5",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "CYP3A5",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "CYP3A5",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "CYP3A5",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "CYP3A5",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99652613,
        "dbSnpId": "rs28365083",
        "call": "G|G",
        "alleles": [
          "*2",
          "*3"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99652770,
        "dbSnpId": "rs41303343",
        "call": "T|T",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99660516,
        "dbSnpId": "rs28383479",
        "call": "C|C",
        "alleles": [
          "*3",
          "*9"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99665212,
        "dbSnpId": "rs10264272",
        "call": "C|C",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99665237,
        "dbSnpId": "rs56411402",
        "call": "T|T",
        "alleles": [
          "*3",
          "*4"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99666950,
        "dbSnpId": "rs55965422",
        "call": "A|A",
        "alleles": [
          "*3",
          "*5"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99672916,
        "dbSnpId": "rs776746",
        "call": "T|T",
        "alleles": [
          "*3"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "CYP3A5",
        "chromosome": "chr7",
        "position": 99676198,
        "dbSnpId": "rs55817950",
        "call": "G|G",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "CYP4F2",
    "chr": "chr19",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "CYP4F2",
          "name": "*1",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "CYP4F2",
          "name": "*1",
          "function": null,
          "reference": true
        },
        "gene": "CYP4F2",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "CYP4F2",
          "name": "*1",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "CYP4F2",
          "name": "*1",
          "function": null,
          "reference": true
        },
        "gene": "CYP4F2",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "CYP4F2",
        "chromosome": "chr19",
        "position": 15879621,
        "dbSnpId": "rs2108622",
        "call": "C|C",
        "alleles": [
          "*3"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "CYP4F2",
        "chromosome": "chr19",
        "position": 15897578,
        "dbSnpId": "rs3093105",
        "call": "A|A",
        "alleles": [
          "*2"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "DPYD",
    "chr": "chr1",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "DPYD reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "DPYD",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The DPYD gene is on the negative chromosomal strand, all genotype calls for DPYD in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "DPYD",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "DPYD",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "gene": "DPYD",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "2",
        "label": "Reference/Reference"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "DPYD",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "DPYD",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "gene": "DPYD",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "2",
        "label": "Reference/Reference"
      }
    ],
    "variants": [
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs114096998",
        "call": "G|G",
        "alleles": [
          "c.3067C\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs148799944",
        "call": "C|C",
        "alleles": [
          "c.3061G\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97079005,
        "dbSnpId": "rs140114515",
        "call": "C|C",
        "alleles": [
          "c.3049G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97079071,
        "dbSnpId": "rs1801268",
        "call": "C|C",
        "alleles": [
          "c.2983G\u003eT (*10)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97079076,
        "dbSnpId": "rs139459586",
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          "c.2978T\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "A",
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      },
      {
        "gene": "DPYD",
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        "phased": false,
        "wildtypeAllele": "G",
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      },
      {
        "gene": "DPYD",
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        "dbSnpId": "rs72547601",
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        "alleles": [
          "c.2933A\u003eG"
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs72547602",
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        "alleles": [
          "c.2921A\u003eT"
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs145529148",
        "call": "T|T",
        "alleles": [
          "c.2915A\u003eG"
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "call": "T|T",
        "alleles": [
          "c.2872A\u003eG"
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
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        "dbSnpId": "rs67376798",
        "call": "T|T",
        "alleles": [
          "c.2846A\u003eT"
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97098598,
        "dbSnpId": "rs1801267",
        "call": "C|C",
        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97098599,
        "dbSnpId": "rs147545709",
        "call": "G|G",
        "alleles": [
          "c.2656C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs55674432",
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        "alleles": [
          "c.2639G\u003eT"
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs201035051",
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        "alleles": [
          "c.2623A\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "T",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs60139309",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "T",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs200687447",
        "call": "C|C",
        "alleles": [
          "c.2482G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs199634007",
        "call": "G|G",
        "alleles": [
          "c.2336C\u003eA"
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        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs56005131",
        "call": "G|G",
        "alleles": [
          "c.2303C\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs112766203",
        "call": "G|G",
        "alleles": [
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        "phased": false,
        "wildtypeAllele": "G",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs60511679",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs1801160",
        "call": "C|C",
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs146529561",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "G",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs138545885",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs3918290",
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        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97450059,
        "dbSnpId": "rs3918289",
        "call": "G|G",
        "alleles": [
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        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97450065,
        "dbSnpId": "rs72549303",
        "call": "TG|TG",
        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "TG",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs17376848",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "A",
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      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
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        "dbSnpId": "rs147601618",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "A",
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      },
      {
        "gene": "DPYD",
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        "phased": false,
        "wildtypeAllele": "C",
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      },
      {
        "gene": "DPYD",
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        "alleles": [
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        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97450190,
        "dbSnpId": "rs59086055",
        "call": "G|G",
        "alleles": [
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        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515784,
        "dbSnpId": "rs201615754",
        "call": "C|C",
        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515787,
        "dbSnpId": "rs55886062",
        "call": "A|A",
        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515839,
        "dbSnpId": "rs1801159",
        "call": "T|T",
        "alleles": [
          "c.1627A\u003eG (*5)"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515851,
        "dbSnpId": "rs142619737",
        "call": "C|C",
        "alleles": [
          "c.1615G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515865,
        "dbSnpId": "rs1801158",
        "call": "C|C",
        "alleles": [
          "c.1601G\u003eA (*4)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515889,
        "dbSnpId": "rs190951787",
        "call": "G|G",
        "alleles": [
          "c.1577C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97515923,
        "dbSnpId": "rs148994843",
        "call": "C|C",
        "alleles": [
          "c.1543G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549565,
        "dbSnpId": "rs138391898",
        "call": "C|C",
        "alleles": [
          "c.1519G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549600,
        "dbSnpId": "rs111858276",
        "call": "T|T",
        "alleles": [
          "c.1484A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549609,
        "dbSnpId": "rs72549304",
        "call": "G|G",
        "alleles": [
          "c.1475C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549681,
        "dbSnpId": "rs199549923",
        "call": "G|G",
        "alleles": [
          "c.1403C\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549713,
        "dbSnpId": "rs57918000",
        "call": "G|G",
        "alleles": [
          "c.1371C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549726,
        "dbSnpId": "rs144395748",
        "call": "G|G",
        "alleles": [
          "c.1358C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97549735,
        "dbSnpId": "rs72975710",
        "call": "G|G",
        "alleles": [
          "c.1349C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573785,
        "dbSnpId": "rs186169810",
        "call": "A|A",
        "alleles": [
          "c.1314T\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573805,
        "dbSnpId": "rs142512579",
        "call": "C|C",
        "alleles": [
          "c.1294G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573821,
        "dbSnpId": "rs764666241",
        "call": "C|C",
        "alleles": [
          "c.1278G\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573839,
        "dbSnpId": "rs200064537",
        "call": "A|A",
        "alleles": [
          "c.1260T\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573863,
        "dbSnpId": "rs56038477",
        "call": "C|C",
        "alleles": [
          "c.1129-5923C\u003eG, c.1236G\u003eA (HapB3)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573881,
        "dbSnpId": "rs61622928",
        "call": "C|C",
        "alleles": [
          "c.1218G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573918,
        "dbSnpId": "rs143815742",
        "call": "C|C",
        "alleles": [
          "c.1181G\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573919,
        "dbSnpId": "rs140602333",
        "call": "G|G",
        "alleles": [
          "c.1180C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97573943,
        "dbSnpId": "rs78060119",
        "call": "C|C",
        "alleles": [
          "c.1156G\u003eT (*12)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97579893,
        "dbSnpId": "rs75017182",
        "call": "G|G",
        "alleles": [
          "c.1129-5923C\u003eG, c.1236G\u003eA (HapB3)"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97593238,
        "dbSnpId": "rs72549305",
        "call": "T|T",
        "alleles": [
          "c.1108A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97593289,
        "dbSnpId": "rs143154602",
        "call": "G|G",
        "alleles": [
          "c.1057C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97593322,
        "dbSnpId": "rs183385770",
        "call": "C|C",
        "alleles": [
          "c.1024G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97593343,
        "dbSnpId": "rs72549306",
        "call": "C|C",
        "alleles": [
          "c.1003G\u003eT (*11)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97593379,
        "dbSnpId": "rs201018345",
        "call": "C|C",
        "alleles": [
          "c.967G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97595083,
        "dbSnpId": "rs145112791",
        "call": "G|G",
        "alleles": [
          "c.934C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97595088,
        "dbSnpId": "rs150437414",
        "call": "A|A",
        "alleles": [
          "c.929T\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97595149,
        "dbSnpId": "rs146356975",
        "call": "T|T",
        "alleles": [
          "c.868A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97679170,
        "dbSnpId": "rs45589337",
        "call": "T|T",
        "alleles": [
          "c.775A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97691776,
        "dbSnpId": "rs1801266",
        "call": "G|G",
        "alleles": [
          "c.703C\u003eT (*8)"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699399,
        "dbSnpId": "rs72549307",
        "call": "T|T",
        "alleles": [
          "c.632A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699430,
        "dbSnpId": "rs72549308",
        "call": "T|T",
        "alleles": [
          "c.601A\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699474,
        "dbSnpId": "rs115232898",
        "call": "T|T",
        "alleles": [
          "c.557A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699506,
        "dbSnpId": "rs6670886",
        "call": "C|C",
        "alleles": [
          "c.525G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699533,
        "dbSnpId": "rs139834141",
        "call": "C|C",
        "alleles": [
          "c.498G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699535,
        "dbSnpId": "rs2297595",
        "call": "T|T",
        "alleles": [
          "c.496A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97721542,
        "dbSnpId": "rs200562975",
        "call": "T|T",
        "alleles": [
          "c.451A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97721650,
        "dbSnpId": "rs141462178",
        "call": "T|T",
        "alleles": [
          "c.343A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97740400,
        "dbSnpId": "rs150385342",
        "call": "C|C",
        "alleles": [
          "c.313G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97740410,
        "dbSnpId": "rs72549309",
        "call": "GATGA|GATGA",
        "alleles": [
          "c.295_298delTCAT (*7)"
        ],
        "phased": false,
        "wildtypeAllele": "GATGA",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883329,
        "dbSnpId": "rs1801265",
        "call": "A|A",
        "alleles": [
          "c.85T\u003eC (*9A)"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883352,
        "dbSnpId": "rs80081766",
        "call": "C|C",
        "alleles": [
          "c.62G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883353,
        "dbSnpId": "rs72549310",
        "call": "G|G",
        "alleles": [
          "c.61C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883368,
        "dbSnpId": "rs150036960",
        "call": "G|G",
        "alleles": [
          "c.46C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "IFNL3",
    "chr": "chr19",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "IFNL3 reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "IFNL3",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The IFNL3 gene is on the negative chromosomal strand, all genotype calls for IFNL3 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "IFNL3",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "rs12979860 reference (C)/rs12979860 reference (C)"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "IFNL3",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "rs12979860 reference (C)/rs12979860 reference (C)"
      }
    ],
    "variants": [
      {
        "gene": "IFNL3",
        "chromosome": "chr19",
        "position": 39248147,
        "dbSnpId": "rs12979860",
        "call": "C|C",
        "alleles": [
          "rs12979860 variant (T)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "NUDT15",
    "chr": "chr13",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "NUDT15",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "NUDT15",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037748,
        "dbSnpId": "rs769369441",
        "call": "T|T",
        "alleles": [
          "*10"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037749,
        "dbSnpId": null,
        "call": "G|G",
        "alleles": [
          "*19"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037782,
        "dbSnpId": "rs746071566",
        "call": "AGGAGTC|AGGAGTC",
        "alleles": [
          "*2",
          "*6",
          "*9"
        ],
        "phased": false,
        "wildtypeAllele": "AGGAGTC",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037798,
        "dbSnpId": "rs186364861",
        "call": "G|G",
        "alleles": [
          "*5"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037825,
        "dbSnpId": "rs777311140",
        "call": "C|C",
        "alleles": [
          "*14"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037834,
        "dbSnpId": "rs1202487323",
        "call": "C|C",
        "alleles": [
          "*16"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037847,
        "dbSnpId": "rs766023281",
        "call": "G|G",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037849,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037885,
        "dbSnpId": "rs1950545307",
        "call": "G|G",
        "alleles": [
          "*11"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037902,
        "dbSnpId": "rs149436418",
        "call": "C|C",
        "alleles": [
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48040977,
        "dbSnpId": "rs1457579126",
        "call": "GA|GA",
        "alleles": [
          "*18"
        ],
        "phased": false,
        "wildtypeAllele": "GA",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48041103,
        "dbSnpId": "rs761191455",
        "call": "T|T",
        "alleles": [
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48041113,
        "dbSnpId": "rs1368252918",
        "call": "G|G",
        "alleles": [
          "*17"
        ],
        "phased": false,
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        "call": "T|T",
        "alleles": [
          "*5",
          "*15",
          "*40",
          "*46",
          "*47"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21178957,
        "dbSnpId": "rs79135870",
        "call": "A|A",
        "alleles": [
          "*30"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196951,
        "dbSnpId": "rs11045852",
        "call": "A|A",
        "alleles": [
          "*24",
          "*25",
          "*28",
          "*32",
          "*33",
          "*43",
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196976,
        "dbSnpId": "rs11045853",
        "call": "G|G",
        "alleles": [
          "*25",
          "*28",
          "*33"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21200595,
        "dbSnpId": "rs55901008",
        "call": "T|T",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202553,
        "dbSnpId": "rs1228465562",
        "call": "T|T",
        "alleles": [
          "*36"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202555,
        "dbSnpId": "rs59113707",
        "call": "C|C",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202649,
        "dbSnpId": "rs56387224",
        "call": "A|A",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202664,
        "dbSnpId": "rs142965323",
        "call": "G|G",
        "alleles": [
          "*26"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21205921,
        "dbSnpId": "rs72559748",
        "call": "A|A",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21205999,
        "dbSnpId": "rs59502379",
        "call": "G|G",
        "alleles": [
          "*9",
          "*31"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239042,
        "dbSnpId": "rs34671512",
        "call": "A|A",
        "alleles": [
          "*19",
          "*20",
          "*40"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239077,
        "dbSnpId": "rs56199088",
        "call": "A|A",
        "alleles": [
          "*10",
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239113,
        "dbSnpId": "rs55737008",
        "call": "A|A",
        "alleles": [
          "*11",
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239145,
        "dbSnpId": "rs200995543",
        "call": "C|C",
        "alleles": [
          "*34"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239158,
        "dbSnpId": "rs140790673",
        "call": "C|C",
        "alleles": [
          "*29"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176871,
        "dbSnpId": null,
        "call": null,
        "alleles": [
          "*38"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176898,
        "dbSnpId": "rs77271279",
        "call": null,
        "alleles": [
          "*41"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21178612,
        "dbSnpId": "rs141467543",
        "call": null,
        "alleles": [
          "*42"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196975,
        "dbSnpId": "rs183501729",
        "call": null,
        "alleles": [
          "*39"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21200544,
        "dbSnpId": "rs72559747",
        "call": null,
        "alleles": [
          "*47"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21206031,
        "dbSnpId": "rs74064213",
        "call": null,
        "alleles": [
          "*43",
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21222355,
        "dbSnpId": "rs71581941",
        "call": null,
        "alleles": [
          "*45",
          "*46"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": [
      "rs4149056T/rs4149056T"
    ]
  },
  {
    "geneSymbol": "TPMT",
    "chr": "chr6",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "TPMT reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "TPMT",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The TPMT gene is on the negative chromosomal strand, all genotype calls for TPMT in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "TPMT",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "TPMT",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "TPMT",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "TPMT",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "TPMT",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "TPMT",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130687,
        "dbSnpId": "rs1142345",
        "call": "T|T",
        "alleles": [
          "*3A",
          "*3C",
          "*41"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130694,
        "dbSnpId": "rs150900439",
        "call": "T|T",
        "alleles": [
          "*20"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130725,
        "dbSnpId": "rs72552736",
        "call": "A|A",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130729,
        "dbSnpId": "rs139392616",
        "call": "C|C",
        "alleles": [
          "*40"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130758,
        "dbSnpId": "rs398122996",
        "call": "A|A",
        "alleles": [
          "*37"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130762,
        "dbSnpId": "rs56161402",
        "call": "C|C",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130772,
        "dbSnpId": "rs377085266",
        "call": "A|A",
        "alleles": [
          "*25"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130781,
        "dbSnpId": "rs1800584",
        "call": "C|C",
        "alleles": [
          "*4"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132136,
        "dbSnpId": "rs72556347",
        "call": "A|A",
        "alleles": [
          "*26"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132147,
        "dbSnpId": "rs79901429",
        "call": "A|A",
        "alleles": [
          "*31"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132163,
        "dbSnpId": null,
        "call": "C|C",
        "alleles": [
          "*36"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133845,
        "dbSnpId": "rs75543815",
        "call": "T|T",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133847,
        "dbSnpId": "rs6921269",
        "call": "C|C",
        "alleles": [
          "*24"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133870,
        "dbSnpId": "rs772832951",
        "call": "A|A",
        "alleles": [
          "*38"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133884,
        "dbSnpId": "rs74423290",
        "call": "G|G",
        "alleles": [
          "*23"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133887,
        "dbSnpId": "rs201695576",
        "call": "T|T",
        "alleles": [
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133890,
        "dbSnpId": "rs9333570",
        "call": "C|C",
        "alleles": [
          "*15"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18138969,
        "dbSnpId": "rs144041067",
        "call": "C|C",
        "alleles": [
          "*16",
          "*22"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18138970,
        "dbSnpId": "rs112339338",
        "call": "G|G",
        "alleles": [
          "*33"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18138997,
        "dbSnpId": "rs1800460",
        "call": "C|C",
        "alleles": [
          "*3A",
          "*3B"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18139027,
        "dbSnpId": "rs72552737",
        "call": "C|C",
        "alleles": [
          "*10"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18139689,
        "dbSnpId": "rs72552738",
        "call": "C|C",
        "alleles": [
          "*11"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18139710,
        "dbSnpId": "rs200220210",
        "call": "G|G",
        "alleles": [
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143597,
        "dbSnpId": null,
        "call": "T|T",
        "alleles": [
          "*19"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143606,
        "dbSnpId": "rs151149760",
        "call": "T|T",
        "alleles": [
          "*9"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143613,
        "dbSnpId": null,
        "call": "C|C",
        "alleles": [
          "*28"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143622,
        "dbSnpId": "rs115106679",
        "call": "C|C",
        "alleles": [
          "*32"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143643,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143700,
        "dbSnpId": "rs753545734",
        "call": "C|C",
        "alleles": [
          "*43"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143718,
        "dbSnpId": "rs111901354",
        "call": "G|G",
        "alleles": [
          "*34"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143724,
        "dbSnpId": "rs1800462",
        "call": "C|C",
        "alleles": [
          "*2"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143728,
        "dbSnpId": "rs1256618794",
        "call": "C|C",
        "alleles": [
          "*43"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147838,
        "dbSnpId": "rs281874771",
        "call": "G|G",
        "alleles": [
          "*39"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147845,
        "dbSnpId": "rs777686348",
        "call": "C|C",
        "alleles": [
          "*18"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147851,
        "dbSnpId": "rs200591577",
        "call": "G|G",
        "alleles": [
          "*21"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147856,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*35"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147910,
        "dbSnpId": "rs72552740",
        "call": "A|A",
        "alleles": [
          "*5"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149004,
        "dbSnpId": null,
        "call": "G|G",
        "alleles": [
          "*17"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149022,
        "dbSnpId": "rs750424422",
        "call": "C|C",
        "alleles": [
          "*30"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149032,
        "dbSnpId": "rs759836180",
        "call": "C|C",
        "alleles": [
          "*42"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149045,
        "dbSnpId": "rs72552742",
        "call": "T|T",
        "alleles": [
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149126,
        "dbSnpId": "rs267607275",
        "call": "A|A",
        "alleles": [
          "*29"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149127,
        "dbSnpId": "rs9333569",
        "call": "T|T",
        "alleles": [
          "*14"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "UGT1A1",
    "chr": "chr2",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "UGT1A1 repeat warning",
        "version": "1",
        "matches": {
          "gene": "UGT1A1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "Some alleles in UGT1A1 are distinguished by a repeat sequence; some genotyping technologies may not accurately call the repeat."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "UGT1A1",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "UGT1A1",
        "phenotype": "Normal Metabolizer",
        "variant": null,
        "lookupKey": "Normal Metabolizer",
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233759924,
        "dbSnpId": "rs887829",
        "call": "C|C",
        "alleles": [
          "*80",
          "*80+*28",
          "*80+*37"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760233,
        "dbSnpId": "rs3064744",
        "call": "CAT|CAT",
        "alleles": [
          "*28",
          "*36",
          "*37",
          "*80+*28",
          "*80+*37"
        ],
        "phased": false,
        "wildtypeAllele": "CAT",
        "mismatch": false
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760498,
        "dbSnpId": "rs4148323",
        "call": "G|G",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760973,
        "dbSnpId": "rs35350960",
        "call": "C|C",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "VKORC1",
    "chr": "chr16",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "VKORC1",
        "version": "1",
        "matches": {
          "gene": "VKORC1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "CPIC recommendations for warfarin use only rs9923231; however, other variants in VKORC1 may have functional consequences and may be more common in some populations."
      },
      {
        "rule_name": "VKORC1 reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "VKORC1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The VKORC1 gene is on the negative chromosomal strand, all genotype calls for VKORC1 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "VKORC1",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "rs9923231 reference (C)/rs9923231 reference (C)"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "VKORC1",
        "phenotype": null,
        "variant": null,
        "lookupKey": null,
        "label": "rs9923231 reference (C)/rs9923231 reference (C)"
      }
    ],
    "variants": [
      {
        "gene": "VKORC1",
        "chromosome": "chr16",
        "position": 31096368,
        "dbSnpId": "rs9923231",
        "call": "C|C",
        "alleles": [
          "rs9923231 variant (T)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  }
]