Mercurial > repos > bgruening > pileometh

annotate tool-data/all_fasta.loc.sample @ 2:cda51d96a9bc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit bff5ba839e2cb63792b0d25018460d76eb398002
author bgruening
date Mon, 13 Feb 2017 07:09:59 -0500
parents 65575e70af7e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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1 #This file lists the locations and dbkeys of all the fasta files
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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2 #under the "genome" directory (a directory that contains a directory
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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3 #for each build). The script extract_fasta.py will generate the file
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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4 #all_fasta.loc. This file has the format (white space characters are
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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5 #TAB characters):
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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6 #
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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7 #<unique_build_id> <dbkey> <display_name> <file_path>
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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8 #
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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9 #So, all_fasta.loc could look something like this:
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
parents:
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10 #
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
parents:
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14 #
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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15 #Your all_fasta.loc file should contain an entry for each individual
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
parents:
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16 #fasta file. So there will be multiple fasta files for each build,
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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17 #such as with hg19 above.
65575e70af7e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 033c712216994524fdd120b771052ac4ca9e51c0-dirty
bgruening
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18 #