Mercurial > repos > bgruening > pileometh

comparison tool_dependencies.xml @ 3:f112bf3dd5ff draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 5468fb89708be679e4e580074734e671f60a9648
author bgruening
date Mon, 13 Feb 2017 22:44:01 -0500
parents d1b66015effd
children b327b539ec58
comparison
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2:cda51d96a9bc 3:f112bf3dd5ff
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pileometh" version="0.1.13"> 3 <package name="methyldackel" version="0.2.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action target_filename="PileOMeth-0.1.13.tar.gz" type="download_by_url">https://github.com/dpryan79/PileOMeth/archive/0.1.13.tar.gz</action> 6 <action target_filename="MethylDackel-0.2.1.tar.gz" type="download_by_url">https://github.com/dpryan79/MethylDackel/archive/0.2.1.tar.gz</action>
7 <action type="shell_command">make</action> 7 <action type="shell_command">make</action>
8 <action type="shell_command">make install prefix=$INSTALL_DIR/bin</action> 8 <action type="shell_command">make install prefix=$INSTALL_DIR/bin</action>
9 <action type="set_environment"> 9 <action type="set_environment">
10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
11 <environment_variable name="PILEOMETH_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> 11 <environment_variable name="METHYLDACKEL_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
12 </action> 12 </action>
13 </actions> 13 </actions>
14 </install> 14 </install>
15 <readme> 15 <readme>
16 <![CDATA[ 16 <![CDATA[
17 PileOMeth: A tool for processing bisulfite sequencing alignments. 17 MethylDackel: A tool for processing bisulfite sequencing alignments.
18 See https://github.com/dpryan79/PileOMeth/ 18 See https://github.com/dpryan79/MethylDackel/
19 ]]> 19 ]]>
20 </readme> 20 </readme>
21 </package> 21 </package>
22 </tool_dependency> 22 </tool_dependency>