Mercurial > repos > bgruening > racon

comparison racon.xml @ 2:aa39b19ca11e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/racon commit 5becaf7365edad176c21a28fd9514a9fb73cbd1a
author bgruening
date Fri, 17 Aug 2018 11:30:25 -0400
parents 4df02149a270
children a199cd7ac344
comparison
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1:4df02149a270 2:aa39b19ca11e
33 -g $g 33 -g $g
34 > racon_polished_consensus.fa 34 > racon_polished_consensus.fa
35 ]]></command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <param type="data" name="reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Sequences"/> 37 <param type="data" name="reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Sequences"/>
38 <param type="data" name="overlaps" format="sam,interval" label="Overlaps"/> 38 <param type="data" name="overlaps" format="sam,tabular" label="Overlaps"/>
39 <param type="data" name="corrected_reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Target sequences"/> 39 <param type="data" name="corrected_reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Target sequences"/>
40 40
41 <param argument="-u" type="boolean" truevalue="-u" falsevalue="" label="output unpolished target sequences" /> 41 <param argument="-u" type="boolean" truevalue="-u" falsevalue="" label="output unpolished target sequences" />
42 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" label="perform fragment correction instead of contig polishing" /> 42 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" label="perform fragment correction instead of contig polishing" />
43 <param argument="-w" type="integer" value="500" label="Size of window on which POA is performed" /> 43 <param argument="-w" type="integer" value="500" label="Size of window on which POA is performed" />