Mercurial > repos > bgruening > repeat_masker

annotate test-data/small_dfam_up.fasta.cat @ 11:72aade318318 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit c4bf14b461856220df4b4bbdbb4b9bbad1ff8749"
author iuc
date Thu, 20 May 2021 12:56:42 +0000
parents bfc70c8cc5ca
children 7563ea7a922d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
10
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
1 18 0.00 0.00 0.00 scaffold_1 613 632 (13519) (GT)n#Simple_repeat 1 20 (0) m_b1s252i0
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
2
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
3 scaffold_1 613 GTGTGTGTGTGTGTGTGTGT 632
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
4
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
5 (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGT 20
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
6
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
7 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
8 Transitions / transversions = 1.00 (0/0)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
9 Gap_init rate = 0.00 (0 / 19), avg. gap size = 0.0 (0 / 0)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
10
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
11 16 18.30 2.22 2.22 scaffold_1 780 824 (13327) (ATAATA)n#Simple_repeat 1 45 (0) m_b1s252i1
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
12
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
13 scaffold_1 780 ATATTAAT-ATACTAAATAATGATAATATTAATTCTAATAATGATA 824
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
14 v - v - i v vv i
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
15 (ATAATA)n#Sim 1 ATAATAATAATAAT-AATAATAATAATAATAATAATAATAATAATA 45
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
16
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
17 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
18 Transitions / transversions = 0.40 (2/5)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
19 Gap_init rate = 0.05 (2 / 44), avg. gap size = 1.00 (2 / 2)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
20
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
21 12 23.88 4.55 0.00 scaffold_1 2231 2274 (11877) (CAGA)n#Simple_repeat 1 46 (0) m_b1s252i2
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
22
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
23 scaffold_1 2231 CAGA-AAACAGTCAGCCAATCAGA-GGACAGACTCAGAGACAGACA 2274
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
24 - i v v iv -i vv v
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
25 (CAGA)n#Simpl 1 CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA 46
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
26
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
27 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
28 Transitions / transversions = 0.50 (3/6)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
29 Gap_init rate = 0.05 (2 / 43), avg. gap size = 1.00 (2 / 2)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
30
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
31 15 18.42 10.20 0.00 scaffold_1 4853 4901 (9250) (TC)n#Simple_repeat 1 54 (0) m_b1s252i3
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
32
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
33 scaffold_1 4853 TCTATTTTTCTCTCTCTCTCT-TCGGTCAGTTTCTCT-TCT-TCTC-CTC 4898
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
34 v i i - vv vv i - - -
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
35 (TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
36
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
37 scaffold_1 4899 -CTC 4901
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
38 -
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
39 (TC)n#Simple_ 51 TCTC 54
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
40
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
41 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
42 Transitions / transversions = 0.60 (3/5)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
43 Gap_init rate = 0.10 (5 / 48), avg. gap size = 1.00 (5 / 5)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
44
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
45 13 19.07 1.82 7.69 scaffold_1 6230 6284 (7867) (TAATTAA)n#Simple_repeat 1 52 (0) m_b1s252i4
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
46
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
47 scaffold_1 6230 TAATGAGT-ATTACTAATTAATAATTGGATGAGTTTATGAATTCATCATT 6278
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
48 v i - v -i - i v - v v
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
49 (TAATTAA)n#Si 1 TAATTAATAATTAATAATTAATAATT-AAT-AATTAAT-AATTAATAATT 47
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
50
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
51 scaffold_1 6279 AAATAA 6284
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
52 -
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
53 (TAATTAA)n#Si 48 -AATAA 52
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
54
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
55 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
56 Transitions / transversions = 0.60 (3/5)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
57 Gap_init rate = 0.09 (5 / 54), avg. gap size = 1.00 (5 / 5)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
58
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
59 15 28.31 0.00 3.51 scaffold_1 6548 6606 (7545) (GACA)n#Simple_repeat 1 57 (0) m_b1s252i5
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
60
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
61 scaffold_1 6548 GACAGAGAGATAAACAGACAGACATGGAAACAGAGGGACATAGAAAACAA 6597
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
62 v i i viv i vi v -v i -
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
63 (GACA)n#Simpl 1 GACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGA-CAGAC-A 48
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
64
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
65 scaffold_1 6598 GACAGAGAG 6606
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
66 v
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
67 (GACA)n#Simpl 49 GACAGACAG 57
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
68
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
69 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
70 Transitions / transversions = 0.86 (6/7)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
71 Gap_init rate = 0.03 (2 / 58), avg. gap size = 1.00 (2 / 2)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
72
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
73 67 2.94 1.43 0.00 scaffold_1 11981 12050 (2170) (CT)n#Simple_repeat 1 71 (0) c_b1s251i0
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
74
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
75 scaffold_1 11981 CTCTCTCTCTCTCCCTCTCCCTCTC-CTCTCTCTCTCTCTCTCTCTCTCT 12029
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
76 i i -
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
77 (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
78
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
79 scaffold_1 12030 CTCTCTCTCTCTCTCTCTCTC 12050
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
80
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
81 (CT)n#Simple_ 51 CTCTCTCTCTCTCTCTCTCTC 71
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
82
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
83 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
84 Transitions / transversions = 1.00 (2/0)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
85 Gap_init rate = 0.01 (1 / 69), avg. gap size = 1.00 (1 / 1)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
86
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
87 19 15.37 2.78 0.00 scaffold_1 12078 12113 (2107) (CT)n#Simple_repeat 1 37 (0) m_b1s252i6
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
88
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
89 scaffold_1 12078 CTCGCTCTCTCACTCTCTCCCTCTCTC-CCCACTCTC 12113
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
90 v v i - i v
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
91 (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 37
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
92
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
93 Matrix = Unknown
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
94 Transitions / transversions = 0.67 (2/3)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
95 Gap_init rate = 0.03 (1 / 35), avg. gap size = 1.00 (1 / 1)
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
96
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
97 ## Total Sequences: 1
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
98 ## Total Length: 14220
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
99 ## Total NonMask ( excluding >20bp runs of N/X bases ): 14220
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
100 ## Total NonSub ( excluding all non ACGT bases ):14220
11
72aade318318 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit c4bf14b461856220df4b4bbdbb4b9bbad1ff8749"
iuc
parents: 10
diff changeset
101 RepeatMasker version 4.1.2-p1 , default mode
10
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
102 run with rmblastn version 2.10.0+
bfc70c8cc5ca "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents:
diff changeset
103 RM Library: CONS-_