Mercurial > repos > bgruening > repeat_masker
comparison test-data/small.fasta.stats @ 14:7563ea7a922d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author | iuc |
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date | Mon, 24 Apr 2023 10:29:31 +0000 |
parents | 72aade318318 |
children |
comparison
equal
deleted
inserted
replaced
13:3f987772e283 | 14:7563ea7a922d |
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8 number of length percentage | 8 number of length percentage |
9 elements* occupied of sequence | 9 elements* occupied of sequence |
10 -------------------------------------------------- | 10 -------------------------------------------------- |
11 Retroelements 0 0 bp 0.00 % | 11 Retroelements 0 0 bp 0.00 % |
12 SINEs: 0 0 bp 0.00 % | 12 SINEs: 0 0 bp 0.00 % |
13 Penelope 0 0 bp 0.00 % | 13 Penelope: 0 0 bp 0.00 % |
14 LINEs: 0 0 bp 0.00 % | 14 LINEs: 0 0 bp 0.00 % |
15 CRE/SLACS 0 0 bp 0.00 % | 15 CRE/SLACS 0 0 bp 0.00 % |
16 L2/CR1/Rex 0 0 bp 0.00 % | 16 L2/CR1/Rex 0 0 bp 0.00 % |
17 R1/LOA/Jockey 0 0 bp 0.00 % | 17 R1/LOA/Jockey 0 0 bp 0.00 % |
18 R2/R4/NeSL 0 0 bp 0.00 % | 18 R2/R4/NeSL 0 0 bp 0.00 % |
26 | 26 |
27 DNA transposons 0 0 bp 0.00 % | 27 DNA transposons 0 0 bp 0.00 % |
28 hobo-Activator 0 0 bp 0.00 % | 28 hobo-Activator 0 0 bp 0.00 % |
29 Tc1-IS630-Pogo 0 0 bp 0.00 % | 29 Tc1-IS630-Pogo 0 0 bp 0.00 % |
30 En-Spm 0 0 bp 0.00 % | 30 En-Spm 0 0 bp 0.00 % |
31 MuDR-IS905 0 0 bp 0.00 % | 31 MULE-MuDR 0 0 bp 0.00 % |
32 PiggyBac 0 0 bp 0.00 % | 32 PiggyBac 0 0 bp 0.00 % |
33 Tourist/Harbinger 0 0 bp 0.00 % | 33 Tourist/Harbinger 0 0 bp 0.00 % |
34 Other (Mirage, 0 0 bp 0.00 % | 34 Other (Mirage, 0 0 bp 0.00 % |
35 P-element, Transib) | 35 P-element, Transib) |
36 | 36 |
51 * most repeats fragmented by insertions or deletions | 51 * most repeats fragmented by insertions or deletions |
52 have been counted as one element | 52 have been counted as one element |
53 Runs of >=20 X/Ns in query were excluded in % calcs | 53 Runs of >=20 X/Ns in query were excluded in % calcs |
54 | 54 |
55 | 55 |
56 RepeatMasker version 4.1.2-p1 , default mode | 56 RepeatMasker version 4.1.5 , default mode |
57 | 57 |
58 run with rmblastn version 2.10.0+ | 58 run with rmblastn version 2.13.0+ |
59 The query was compared to unclassified sequences in ".../dataset_a3b3078d-de09-4651-9e83-62019a3d45ba.dat" | 59 The query was compared to unclassified sequences in ".../dataset_9e3ddbd2-0776-4c6d-bed6-0f4cd415796c.dat" |
60 FamDB: | 60 FamDB: |