Mercurial > repos > bgruening > repeat_masker

comparison test-data/small.fasta.stats @ 14:7563ea7a922d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author iuc
date Mon, 24 Apr 2023 10:29:31 +0000
parents 72aade318318
children
comparison
equal deleted inserted replaced
13:3f987772e283 14:7563ea7a922d
8 number of length percentage 8 number of length percentage
9 elements* occupied of sequence 9 elements* occupied of sequence
10 -------------------------------------------------- 10 --------------------------------------------------
11 Retroelements 0 0 bp 0.00 % 11 Retroelements 0 0 bp 0.00 %
12 SINEs: 0 0 bp 0.00 % 12 SINEs: 0 0 bp 0.00 %
13 Penelope 0 0 bp 0.00 % 13 Penelope: 0 0 bp 0.00 %
14 LINEs: 0 0 bp 0.00 % 14 LINEs: 0 0 bp 0.00 %
15 CRE/SLACS 0 0 bp 0.00 % 15 CRE/SLACS 0 0 bp 0.00 %
16 L2/CR1/Rex 0 0 bp 0.00 % 16 L2/CR1/Rex 0 0 bp 0.00 %
17 R1/LOA/Jockey 0 0 bp 0.00 % 17 R1/LOA/Jockey 0 0 bp 0.00 %
18 R2/R4/NeSL 0 0 bp 0.00 % 18 R2/R4/NeSL 0 0 bp 0.00 %
26 26
27 DNA transposons 0 0 bp 0.00 % 27 DNA transposons 0 0 bp 0.00 %
28 hobo-Activator 0 0 bp 0.00 % 28 hobo-Activator 0 0 bp 0.00 %
29 Tc1-IS630-Pogo 0 0 bp 0.00 % 29 Tc1-IS630-Pogo 0 0 bp 0.00 %
30 En-Spm 0 0 bp 0.00 % 30 En-Spm 0 0 bp 0.00 %
31 MuDR-IS905 0 0 bp 0.00 % 31 MULE-MuDR 0 0 bp 0.00 %
32 PiggyBac 0 0 bp 0.00 % 32 PiggyBac 0 0 bp 0.00 %
33 Tourist/Harbinger 0 0 bp 0.00 % 33 Tourist/Harbinger 0 0 bp 0.00 %
34 Other (Mirage, 0 0 bp 0.00 % 34 Other (Mirage, 0 0 bp 0.00 %
35 P-element, Transib) 35 P-element, Transib)
36 36
51 * most repeats fragmented by insertions or deletions 51 * most repeats fragmented by insertions or deletions
52 have been counted as one element 52 have been counted as one element
53 Runs of >=20 X/Ns in query were excluded in % calcs 53 Runs of >=20 X/Ns in query were excluded in % calcs
54 54
55 55
56 RepeatMasker version 4.1.2-p1 , default mode 56 RepeatMasker version 4.1.5 , default mode
57 57
58 run with rmblastn version 2.10.0+ 58 run with rmblastn version 2.13.0+
59 The query was compared to unclassified sequences in ".../dataset_a3b3078d-de09-4651-9e83-62019a3d45ba.dat" 59 The query was compared to unclassified sequences in ".../dataset_9e3ddbd2-0776-4c6d-bed6-0f4cd415796c.dat"
60 FamDB: 60 FamDB: