Mercurial > repos > bgruening > repeat_masker

comparison repeatmasker.xml @ 5:8404aa79a631 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 9c21a3564ebac92db23e2d827dabe6b05c56ad32
author iuc
date Wed, 23 May 2018 14:24:14 -0400
parents 04f5c3d7448e
children 65ab76d58c41
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4:04f5c3d7448e 5:8404aa79a631
64 #end if 64 #end if
65 #if $advanced.poly == '-poly': 65 #if $advanced.poly == '-poly':
66 sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' && 66 sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' &&
67 #end if 67 #end if
68 #end if 68 #end if
69 mv rm_input.fasta.cat '${output_repeat_catalog}' 69 if [ -f 'rm_input.fasta.cat.gz' ]; then
70 zcat 'rm_input.fasta.cat.gz' > '${output_repeat_catalog}';
71 else
72 mv rm_input.fasta.cat '${output_repeat_catalog}';
73 fi
70 ]]> 74 ]]>
71 </command> 75 </command>
72 76
73 <inputs> 77 <inputs>
74 <param name="input_fasta" type="data" format="fasta" label="Genomic DNA" /> 78 <param name="input_fasta" type="data" format="fasta" label="Genomic DNA" />