Mercurial > repos > bgruening > repeat_masker

comparison test-data/small_dfam_up.fasta.stats @ 10:bfc70c8cc5ca draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
author iuc
date Fri, 11 Dec 2020 22:26:02 +0000
parents
children 72aade318318
comparison
equal deleted inserted replaced
9:438f65cb1d14 10:bfc70c8cc5ca
1 ==================================================
2 file name: rm_input.fasta
3 sequences: 1
4 total length: 14220 bp (14220 bp excl N/X-runs)
5 GC level: 39.94 %
6 bases masked: 378 bp ( 2.66 %)
7 ==================================================
8 number of length percentage
9 elements* occupied of sequence
10 --------------------------------------------------
11 SINEs: 0 0 bp 0.00 %
12 Alu/B1 0 0 bp 0.00 %
13 B2-B4 0 0 bp 0.00 %
14 IDs 0 0 bp 0.00 %
15 MIRs 0 0 bp 0.00 %
16
17 LINEs: 0 0 bp 0.00 %
18 LINE1 0 0 bp 0.00 %
19 LINE2 0 0 bp 0.00 %
20 L3/CR1 0 0 bp 0.00 %
21
22 LTR elements: 0 0 bp 0.00 %
23 ERVL 0 0 bp 0.00 %
24 ERVL-MaLRs 0 0 bp 0.00 %
25 ERV_classI 0 0 bp 0.00 %
26 ERV_classII 0 0 bp 0.00 %
27
28 DNA elements: 0 0bp 0.00 %
29 hAT-Charlie 0 0 bp 0.00 %
30 TcMar-Tigger 0 0 bp 0.00 %
31
32 Unclassified: 0 0 bp 0.00 %
33
34 Total interspersed repeats: 0 bp 0.00 %
35
36
37 Small RNA: 0 0 bp 0.00 %
38
39 Satellites: 0 0 bp 0.00 %
40 Simple repeats: 7 378 bp 2.66 %
41 Low complexity: 0 0 bp 0.00 %
42 ==================================================
43
44 * most repeats fragmented by insertions or deletions
45 have been counted as one element
46 Runs of >=20 X/Ns in query were excluded in % calcs
47
48
49 The query species was assumed to be rodent
50 RepeatMasker version 4.1.1 , default mode
51
52 run with rmblastn version 2.10.0+
53