Mercurial > repos > bgruening > repeat_masker

diff test-data/fake_repbase.embl @ 4:04f5c3d7448e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
author iuc
date Fri, 04 May 2018 07:59:50 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fake_repbase.embl	Fri May 04 07:59:50 2018 -0400
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+CC Fake repbase-like embl file, using data from DfamConsensus.embl*
+CC ****************************************************************
+XX
+ID   ACROBAT1     repeatmasker; DNA;  ???;  768 BP.
+CC   consensus - See RepBase for additional annotations.
+XX
+SQ   Sequence 768 BP; 178 A; 194 C; 215 G; 181 T; 0 other;
+     ggtgatgctg ccaacttact gatttagtgt atgatggtgt ttttgaggtg ctccagtggc   60
+     ttctgtttct atcagctgtc cctcctgttc agctactgac ggggtggtgc gtaacggcaa   120
+     aagcaccgcc ggacatcagc gctatctctg ctctcactgc cgtaaaacat ggcaactgca   180
+     gttcacttac accgcttctc aacccggtac gcaccagaaa atcattgata tggccatgaa   240
+     tggcgttgga tgccgggcaa cagcccgcat tatgggcgtt ggcctcaaca cgattttacg   300
+     tcacttaaaa aactcaggcc gcagtcggta acctcgcgca tacagccggg cagtgacgtc   360
+     atcgtctgcg cggaaatgga cgaacagtgg ggctatgtcg gggctaaatc gcgccagcgc   420
+     tggctgtttt acgcgtatga cagtctccgg aagacggttg ttgcgcacgt attcggtgaa   480
+     cgcactatgg cgacgctggg gcgtcttatg agcctgctgt caccctttga cgtggtgata   540
+     tggatgacgg atggctggcc gctgtatgaa tcccgcctga agggaaagct gcacgtaatc   600
+     agcaagcgat atacgcagcg aattgagcgg cataacctga atctgaggca gcacctggca   660
+     cggctgggac ggaagtcgct gtcgttctca aaatcggtgg agctgcatga caaagtcatc   720
+     gggcattatc tgaacataaa acactatcaa taagttggag tcattacc                768
+//