Mercurial > repos > bgruening > repeat_masker

diff repeatmasker.xml @ 12:39b40a9a6296 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 2f2463888c41a99aec46d4da0eb0ac66cbc20889"
author iuc
date Fri, 27 Aug 2021 09:16:08 +0000
parents 72aade318318
children 3f987772e283
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--- a/repeatmasker.xml	Thu May 20 12:56:42 2021 +0000
+++ b/repeatmasker.xml	Fri Aug 27 09:16:08 2021 +0000
@@ -11,7 +11,7 @@
     RM_PATH=\$(which RepeatMasker) &&
     if [ -z "\$RM_PATH" ] ; then echo "Failed to find RepeatMasker in PATH (\$PATH)" >&2 ; exit 1 ; fi &&
 
-    RM_LIB_PATH=\$(dirname \$RM_PATH)/../share/RepeatMasker/Libraries &&
+    if [ -z "\$RM_LIB_PATH" ] ; then RM_LIB_PATH=\$(dirname \$RM_PATH)/../share/RepeatMasker/Libraries ; fi &&
     #if $repeat_source.source_type == "dfam_up":
       mkdir lib/ &&
       ln -s '${repeat_source.dfam_lib}' lib/RepeatMaskerLib.h5 &&