Mercurial > repos > bgruening > repeat_masker

diff test-data/small.fasta.gff @ 14:7563ea7a922d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author iuc
date Mon, 24 Apr 2023 10:29:31 +0000
parents 72aade318318
children
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--- a/test-data/small.fasta.gff	Thu Oct 21 15:49:31 2021 +0000
+++ b/test-data/small.fasta.gff	Mon Apr 24 10:29:31 2023 +0000
@@ -1,11 +1,10 @@
-##gff-version 2
-##date 2021-05-20
-##sequence-region rm_input.fasta
-scaffold_1	RepeatMasker	similarity	613	632	 0.0	+	.	Target "Motif:(GT)n" 1 20
-scaffold_1	RepeatMasker	similarity	780	824	18.3	+	.	Target "Motif:(ATAATA)n" 1 45
-scaffold_1	RepeatMasker	similarity	2231	2274	23.9	+	.	Target "Motif:(CAGA)n" 1 46
-scaffold_1	RepeatMasker	similarity	4853	4901	18.4	+	.	Target "Motif:(TC)n" 1 54
-scaffold_1	RepeatMasker	similarity	6230	6284	19.1	+	.	Target "Motif:(TAATTAA)n" 1 52
-scaffold_1	RepeatMasker	similarity	6548	6606	28.3	+	.	Target "Motif:(GACA)n" 1 57
-scaffold_1	RepeatMasker	similarity	11981	12050	 2.9	+	.	Target "Motif:(CT)n" 1 71
-scaffold_1	RepeatMasker	similarity	12078	12113	15.4	+	.	Target "Motif:(CT)n" 1 37
+##gff-version 3
+##sequence-region scaffold_1 1 14220
+scaffold_1	RepeatMasker	dispersed_repeat	613	632	 0.0	+	.	ID=1;Target "Motif:(GT)n" 1 20
+scaffold_1	RepeatMasker	dispersed_repeat	780	824	18.3	+	.	ID=2;Target "Motif:(ATAATA)n" 1 45
+scaffold_1	RepeatMasker	dispersed_repeat	2231	2274	23.9	+	.	ID=3;Target "Motif:(CAGA)n" 1 46
+scaffold_1	RepeatMasker	dispersed_repeat	4853	4901	18.4	+	.	ID=4;Target "Motif:(TC)n" 1 54
+scaffold_1	RepeatMasker	dispersed_repeat	6230	6284	19.1	+	.	ID=5;Target "Motif:(TAATTAA)n" 1 52
+scaffold_1	RepeatMasker	dispersed_repeat	6548	6606	28.3	+	.	ID=6;Target "Motif:(GACA)n" 1 57
+scaffold_1	RepeatMasker	dispersed_repeat	11981	12050	 2.9	+	.	ID=7;Target "Motif:(CT)n" 1 71
+scaffold_1	RepeatMasker	dispersed_repeat	12078	12113	15.4	+	.	ID=8;Target "Motif:(CT)n" 1 37