Mercurial > repos > bgruening > repeat_masker

diff RepeatMasker.xml @ 1:880265000696 draft

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Uploaded
author bgruening
date Tue, 25 Jun 2013 08:58:21 -0400
parents d4a2c739da3f
children 5673e72241aa
line wrap: on
line diff
--- a/RepeatMasker.xml	Tue Jun 25 04:33:41 2013 -0400
+++ b/RepeatMasker.xml	Tue Jun 25 08:58:21 2013 -0400
@@ -66,21 +66,21 @@
     #if "summary" in $output_files_list:
         ## Write out the summary file (default)
         #set $summary_file = $output_basename + '.tbl'
-        touch $summary_file
+        touch $summary_file;
         cp $summary_file $output_summary;
     #end if
 
     #if "gff" in $output_files_list:
         ## Write out the gff file (default)
         #set $gff_file = $output_basename + '.out.gff'
-        touch $gff_file
+        touch $gff_file;
         cp $gff_file $output_gff;
     #end if
 
     #if "html" in $output_files_list:
         ## Write out the html file
         #set $html_file = $output_basename + '.out.html'
-        touch $html_file
+        touch $html_file;
         cp $html_file $output_html;
     #end if
 
@@ -88,12 +88,12 @@
 
     ## Write out the summary file (default)
     #set $summary_file = $output_basename + '.tbl'
-    touch $summary_file
+    touch $summary_file;
     cp $summary_file $output_summary;
 
     ## Write out the gff file (default)
     #set $gff_file = $output_basename + '.out.gff'
-    touch $gff_file
+    touch $gff_file;
     cp $gff_file $output_gff;
 
 
@@ -102,7 +102,7 @@
 
 ## Write out mask sequence file
 #set $mask_sequence_file = $output_basename + '.masked'
-touch $mask_sequence_file
+touch $mask_sequence_file;
 cp $mask_sequence_file $output_mask;
 
 ## Write out standard file (default)