Mercurial > repos > bgruening > repeat_masker
diff test-data/small.fasta.stats @ 10:bfc70c8cc5ca draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
| author | iuc |
|---|---|
| date | Fri, 11 Dec 2020 22:26:02 +0000 |
| parents | 438f65cb1d14 |
| children | 72aade318318 |
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--- a/test-data/small.fasta.stats Tue Aug 18 05:39:55 2020 -0400 +++ b/test-data/small.fasta.stats Fri Dec 11 22:26:02 2020 +0000 @@ -8,35 +8,44 @@ number of length percentage elements* occupied of sequence -------------------------------------------------- -SINEs: 0 0 bp 0.00 % - ALUs 0 0 bp 0.00 % - MIRs 0 0 bp 0.00 % - -LINEs: 0 0 bp 0.00 % - LINE1 0 0 bp 0.00 % - LINE2 0 0 bp 0.00 % - L3/CR1 0 0 bp 0.00 % +Retroelements 0 0 bp 0.00 % + SINEs: 0 0 bp 0.00 % + Penelope 0 0 bp 0.00 % + LINEs: 0 0 bp 0.00 % + CRE/SLACS 0 0 bp 0.00 % + L2/CR1/Rex 0 0 bp 0.00 % + R1/LOA/Jockey 0 0 bp 0.00 % + R2/R4/NeSL 0 0 bp 0.00 % + RTE/Bov-B 0 0 bp 0.00 % + L1/CIN4 0 0 bp 0.00 % + LTR elements: 0 0 bp 0.00 % + BEL/Pao 0 0 bp 0.00 % + Ty1/Copia 0 0 bp 0.00 % + Gypsy/DIRS1 0 0 bp 0.00 % + Retroviral 0 0 bp 0.00 % -LTR elements: 0 0 bp 0.00 % - ERVL 0 0 bp 0.00 % - ERVL-MaLRs 0 0 bp 0.00 % - ERV_classI 0 0 bp 0.00 % - ERV_classII 0 0 bp 0.00 % +DNA transposons 0 0 bp 0.00 % + hobo-Activator 0 0 bp 0.00 % + Tc1-IS630-Pogo 0 0 bp 0.00 % + En-Spm 0 0 bp 0.00 % + MuDR-IS905 0 0 bp 0.00 % + PiggyBac 0 0 bp 0.00 % + Tourist/Harbinger 0 0 bp 0.00 % + Other (Mirage, 0 0 bp 0.00 % + P-element, Transib) -DNA elements: 0 0 bp 0.00 % - hAT-Charlie 0 0 bp 0.00 % - TcMar-Tigger 0 0 bp 0.00 % +Rolling-circles 0 0 bp 0.00 % -Unclassified: 0 0 bp 0.00 % +Unclassified: 0 0 bp 0.00 % -Total interspersed repeats: 0 bp 0.00 % +Total interspersed repeats: 0 bp 0.00 % -Small RNA: 0 0 bp 0.00 % +Small RNA: 0 0 bp 0.00 % -Satellites: 0 0 bp 0.00 % -Simple repeats: 8 378 bp 2.66 % -Low complexity: 0 0 bp 0.00 % +Satellites: 0 0 bp 0.00 % +Simple repeats: 8 378 bp 2.66 % +Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions @@ -44,9 +53,8 @@ Runs of >=20 X/Ns in query were excluded in % calcs -The query species was assumed to be homo -RepeatMasker Combined Database: Dfam-Dfam_3.0 - -run with rmblastn version 2.9.0+ -The query was compared to unclassified sequences in ".../dataset_257a7a8f-7065-486a-ae21-53e1fceff0f8.dat" +RepeatMasker version 4.1.1 , default mode + +run with rmblastn version 2.10.0+ +The query was compared to unclassified sequences in ".../dataset_a9c6a294-8dbb-4a71-ad9c-e36735923fbf.dat"