Mercurial > repos > bgruening > repeat_masker
view test-data/small_repbase.fasta.stats @ 4:04f5c3d7448e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
| author | iuc |
|---|---|
| date | Fri, 04 May 2018 07:59:50 -0400 |
| parents | |
| children | 438f65cb1d14 |
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================================================== file name: rm_input.fasta sequences: 1 total length: 14220 bp (14220 bp excl N/X-runs) GC level: 39.94 % bases masked: 378 bp ( 2.66 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 0 0 bp 0.00 % SINEs: 0 0 bp 0.00 % Penelope 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 0 0 bp 0.00 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 0 0 bp 0.00 % L1/CIN4 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % BEL/Pao 0 0 bp 0.00 % Ty1/Copia 0 0 bp 0.00 % Gypsy/DIRS1 0 0 bp 0.00 % Retroviral 0 0 bp 0.00 % DNA transposons 0 0 bp 0.00 % hobo-Activator 0 0 bp 0.00 % Tc1-IS630-Pogo 0 0 bp 0.00 % En-Spm 0 0 bp 0.00 % MuDR-IS905 0 0 bp 0.00 % PiggyBac 0 0 bp 0.00 % Tourist/Harbinger 0 0 bp 0.00 % Other (Mirage, 0 0 bp 0.00 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 0 bp 0.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 7 378 bp 2.66 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be anopheles genus RepeatMasker Combined Database: Dfam_Consensus-20170127 run with rmblastn version 2.2.27+