Mercurial > repos > bgruening > rnaz_randomize_aln

diff test-data/snoRNA.aln @ 0:5d006d19f70a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_team/rnaz commit d261ddb93500e1ea309845fa3989c87c6312583d-dirty
author bgruening
date Wed, 30 Jan 2019 04:12:32 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/snoRNA.aln	Wed Jan 30 04:12:32 2019 -0500
@@ -0,0 +1,36 @@
+CLUSTAL W(1.81) multiple sequence alignment
+
+
+470004_ENSG00000182512_HUMAN_8267_8506/1-243    GTACCCTCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGC
+470004_ENSMUSG00000021102_MOUSE_8376_8616/1-243 GTACCCTAGAGCACACCAGACTTGCAGAGAAAGCAGACAACAGAGGAAGCTGAGGCATGC
+470004_SINFRUG00000145950_FUGU_5916_6140/1-243  --------GGGCACAACAAGGTTGC--AGAAAGCAT-C-CCAAAGGATGAAAAGGCGTGA
+470004_ENSRNOG00000004206_RAT_8331_8570/1-243   -TACCCTCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGC
+                                                        * ***** **   ****  * ******  *  ** **** *   **** ** 
+
+
+470004_ENSG00000182512_HUMAN_8267_8506/1-243    CTGCTCGAGAGCCAGCTGTTCCATGTGCAATTTTCCTCTGATAGTTTCTGGTCACTGTTG
+470004_ENSMUSG00000021102_MOUSE_8376_8616/1-243 CTGCTCGAGAGGCAGCAGGCCCATGTGCAATTTTCCTCTGATAGGGCCTGGGTACTGTTG
+470004_SINFRUG00000145950_FUGU_5916_6140/1-243  CTTCCAGAGGTCTGGGAATTCCACGTGCGATGTT-CTTTGA-A---CAAACACCTGCTTT
+470004_ENSRNOG00000004206_RAT_8331_8570/1-243   CTGCTCGAGAGCCAGCGGTTCCATGTGCAATTTTCCTCTGATAAATCCTGGGTACTGTTG
+                                                ** *  ***     *     *** **** ** ** ** *** *              ** 
+
+
+470004_ENSG00000182512_HUMAN_8267_8506/1-243    CCACGGTGATAATGACTGGGCTATGTCATTATCTATCCGCCAACAGTAAGAGAAGCTTTG
+470004_ENSMUSG00000021102_MOUSE_8376_8616/1-243 CCACGGTGATAATGGCTGTGCCGTGTCATTGTCGATCCACCAACAGTCAGAGAAGCTTGG
+470004_SINFRUG00000145950_FUGU_5916_6140/1-243  CCACGGTGGCGATGGCCTTGTTCTGTAGCCATCGCATTTCTTGAGGCAGGTAGAAAAAAA
+470004_ENSRNOG00000004206_RAT_8331_8570/1-243   CCACGGTGATAATGACTGTGCCGTGTCATTGTCGATCCACCAACAGTCAGAGAAGCTTTG
+                                                ********   *** *   *   ***     **      *     *   *   *      
+
+
+470004_ENSG00000182512_HUMAN_8267_8506/1-243    CAGTCGAGATATTGTTT--AGCAGATGGAGTGTTTTCTGTTGAACACTAAGTACTGCCAC
+470004_ENSMUSG00000021102_MOUSE_8376_8616/1-243 CAGTCAAGATATTGTTT--AGCAGACGGAGCGGTTTCTGTTGGACACTAAGTACTGCCAC
+470004_SINFRUG00000145950_FUGU_5916_6140/1-243  CAG-CATGATATTGTTTGAAGCGGGGAGAGCTGTTCCCGTCAGACACTGTCCGCTGTCAC
+470004_ENSRNOG00000004206_RAT_8331_8570/1-243   CAGTCAAGATATTGTTT--AGCAGACGGAGCGGTTTCTGTTGGACACTAAGTGCTGCTAC
+                                                *** *  **********  *** *   ***   ** * **   *****     ***  **
+
+
+470004_ENSG00000182512_HUMAN_8267_8506/1-243    AA-
+470004_ENSMUSG00000021102_MOUSE_8376_8616/1-243 AAA
+470004_SINFRUG00000145950_FUGU_5916_6140/1-243  AGC
+470004_ENSRNOG00000004206_RAT_8331_8570/1-243   AAG
+                                                *