Mercurial > repos > bgruening > run_jupyter_job

comparison run_jupyter_job.xml @ 1:c93b2676a27d draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/jupyter_job commit 6817ef65c64c0800e21815822c38beba52075f75"
author bgruening
date Sun, 20 Feb 2022 15:43:37 +0000
parents f4619200cb0a
children bf2963c9bcdc
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0:f4619200cb0a 1:c93b2676a27d
1 <tool id="run_jupyter_job" name="Run long running jupyterlab script" hidden="true" version="0.0.1" profile="21.09"> 1 <tool id="run_jupyter_job" name="Run long running jupyterlab script" hidden="true" version="0.0.1" profile="20.09">
2 <description>inside a Docker container</description> 2 <description>inside a Docker container</description>
3 <requirements> 3 <requirements>
4 <container type="docker">docker.io/anupkumar/docker-ml-jupyterlab:galaxy-integration-0.1</container> 4 <container type="docker">docker.io/anupkumar/docker-ml-jupyterlab:galaxy-integration-0.1</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[ 6 <command detect_errors="aggressive"><![CDATA[
7 python '${__tool_directory__}/main.py' 7 python '${__tool_directory__}/main.py'
8 --ml_paths '$ml_h5_dataset_paths' 8 --ml_paths '$ml_h5_dataset_paths'
9 --loaded_file '$select_file' 9 --loaded_file '$select_file'
10 --working_dir `pwd` 10 --working_dir `pwd`
11 --output_array '$outfile_output_arrays' 11 --output_array '$outfile_output_arrays'
12 --output_zip '$outfile_output_zip' 12 --output_zip '$outfile_output_zip'
13 --ml_h5_files '$ml_h5_datasets' 13 --ml_h5_files '$ml_h5_datasets'
14 ]]> 14 ]]>
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <param name="ml_h5_dataset_paths" type="text" label="Data paths" optional="true" /> 17 <param name="ml_h5_dataset_paths" type="text" label="Data paths" optional="true" />
18 <param name="select_file" type="data" label="Load file" format="txt" /> 18 <param name="select_file" type="data" label="Load file" format="txt" />