Mercurial > repos > bgruening > sailfish

comparison test-data/sailfish_bias_result1.tab @ 0:3b4ed0e473dc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit bd2dd2419ea52f30cd7de2f7109a12b49b5d0dba-dirty
author bgruening
date Fri, 16 Oct 2015 15:09:03 -0400
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children 1b4ed566a41c
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-1:000000000000 0:3b4ed0e473dc
1 # sailfish (quasi-mapping-based) v0.7.6
2 # [ program ] => sailfish
3 # [ command ] => quant
4 # [ index ] => { ./index_dir }
5 # [ mates1 ] => { ./mate1.fastq }
6 # [ mates2 ] => { ./mate2.fastq }
7 # [ libType ] => { IU }
8 # [ output ] => { ./ }
9 # [ biasCorrect ] => { }
10 # [ threads ] => { 1 }
11 # [ fldMean ] => { 200 }
12 # [ fldSD ] => { 80 }
13 # [ maxReadOcc ] => { 200 }
14 # [ maxFragLen ] => { 1000 }
15 # [ txpAggregationKey ] => { gene_id }
16 # [ mapping rate ] => { 100% }
17 # Name Length TPM NumReads
18 NM_022658 2288 378838 4881
19 NM_174914 2385 111257 1500.04
20 NM_017410 2396 3099.5 42
21 NM_018953 1612 26168.3 228
22 NM_001168316 2283 12398.5 159.361
23 NM_004503 1681 36198.8 330.806
24 NR_003084 1640 0 0
25 NM_173860 849 240218 962
26 NM_006897 1541 80244.3 664
27 NM_153693 2072 6430.57 74.2815
28 NR_031764 1853 10254.5 104.595
29 NM_014620 2300 45132.7 584.838
30 NM_153633 1666 40578.4 367.074
31 NM_014212 2037 4852.08 55
32 NM_017409 1959 4330.19 47