Mercurial > repos > bgruening > sailfish
comparison tool-data/sailfish_indexes.loc.sample @ 0:3b4ed0e473dc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit bd2dd2419ea52f30cd7de2f7109a12b49b5d0dba-dirty
| author | bgruening |
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| date | Fri, 16 Oct 2015 15:09:03 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:3b4ed0e473dc |
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| 1 # This is a sample file distributed with Galaxy that is used to define a | |
| 2 # list of sailfish indices, using three columns tab separated: | |
| 3 # | |
| 4 # sailfish_index_id{tab}Sailfish Index desciption{tab}/data/sailfish_indexes/sailfish_index_id/ | |
| 5 # | |
| 6 # An index can be created with the following command: | |
| 7 # | |
| 8 # sailfish index | |
| 9 # --transcripts your_transcripts.fasta | |
| 10 # --kmerSize 21 | |
| 11 # --out /data/sailfish_indexes/sailfish_index_id/ | |
| 12 # --threads 4 | |
| 13 # | |
| 14 |