Mercurial > repos > bgruening > salmonquantmerge

comparison umiout.sh @ 2:178ebdfe5a7e draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit c17bc974bf9bbaa1fc1e47ea72162fd244f0e612"
author bgruening
date Tue, 15 Oct 2019 12:01:50 -0400
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1:992c077f6e41 2:178ebdfe5a7e
1 #!/usr/bin/bash
2
3 mkdir fixed;
4 for file in ./umiout/*;
5 do prefix="${file%.dot.gz}";
6 prefix=${prefix/.\/umiout\//};
7 gunzip $file;
8 sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
9 dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
10 done
11 ls fixed