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comparison tool-data/salmon_indexes_versioned.loc.sample @ 0:43658f594542 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
author bgruening
date Mon, 09 Sep 2019 11:12:04 -0400
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-1:000000000000 0:43658f594542
1 # salmon_indexes_versioned.loc.sample
2 # This is a *.loc.sample file distributed with Galaxy that enables tools
3 # to use a directory of indexed data files. This one is for Salmon.
4 # See the wiki: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
5 # First create these data files and save them in your own data directory structure.
6 # Then, create a salmon_indexes_versioned.loc.sample file to use those indexes with tools.
7 # Copy this file, save it with the same name (minus the .sample),
8 # follow the format examples, and store the result in this directory.
9 # The file should include an one line entry for each index set.
10 # The path points to the "basename" for the set, not a specific file.
11 # It has four text columns seperated by TABS.
12 #
13 # <unique_build_id> <dbkey> <display_name> <file_base_path> <version>
14 #
15 # The <version> column can be retrieved from the header.json file in the index folder. e.g "IndexVersion": "q5"
16
17
18
19 # So, for example, if you had sacCer3 indexes stored in:
20 #
21 # /depot/data2/galaxy/sacCer3/salmon_indexes/
22 #
23 # then the salmon_indexes.loc entry could look like this:
24 #
25 #sacCer3 sacCer3 S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3) /depot/data2/galaxy/sacCer3/salmon_indexes/version_3/ q6
26 #
27 #More examples:
28 #
29 #mm10 mm10 Mouse (mm10) /depot/data2/galaxy/salmon_indexes/mm10/version_2 q4
30 #dm3 dm3 D. melanogaster (dm3) /depot/data2/galaxy/salmon_indexes/dm3/version_1 q5
31 #
32 #