Mercurial > repos > bgruening > salmonquantmerge
view salmonquantmerge.xml @ 3:f6e3a10a88e5 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 30fe16f7d786e4b0c43b8333853fc56c59f6c664"
author | bgruening |
---|---|
date | Sat, 25 Apr 2020 11:52:56 -0400 |
parents | 43658f594542 |
children | 88c07fc4024c |
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<tool id="salmonquantmerge" name="Salmon quantmerge" version="@VERSION@"> <description>Merge multiple quantification results into a single file</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ @qmerge@ ]]></command> <inputs> <expand macro="quantmerge"/> </inputs> <outputs> <data name="mergedfile" format="tabular" label="${tool.name} on ${on_string}" from_work_dir="qmergeout.tab"/> </outputs> <tests> <test expect_num_outputs="1"> <repeat name="quantfiles"> <param name="quants" value="quant2.sf"/> <param name="names" value="asdf"/> </repeat> <repeat name="quantfiles"> <param name="quants" value="quant1.sf"/> <param name="names" value="qwerty"/> </repeat> <output name="mergedfile" ftype="tabular"> <assert_contents> <has_text text="qwerty"/> <has_text text="NM_014621"/> <has_n_columns n="3"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ @salmonhelp@ ]]></help> <expand macro="citations"/> </tool>