Mercurial > repos > bgruening > scipy_sparse

annotate keras_macros.xml @ 26:d0ed8e976b79 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
author bgruening
date Fri, 09 Aug 2019 07:27:03 -0400
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children eb3091b4ee4b
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26
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1 <macros>
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2 <token name="@KERAS_VERSION@">0.4.0</token>
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3
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4 <xml name="macro_stdio">
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5 <stdio>
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6 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/>
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7 </stdio>
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8 </xml>
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9
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10 <xml name="keras_optimizer_common" token_lr="0.01">
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11 <section name="optimizer_options" title="Optimizer Advanced Options" expanded="false">
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12 <param argument="lr" type="float" value="@LR@" optional="true" label="Learning rate" help="float >= 0"/>
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13 <yield/>
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14 <!--param argument="clipnorm" type="float" value="" optional="true" label="clipnorm" help="float >= 0"/-->
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15 <!--param argument="clipvalue" type="float" value="" optional="true" label="clipvalue" help="float >= 0"/-->
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16 </section>
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17 </xml>
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18
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19 <xml name="keras_optimizer_common_more" token_lr="0.001">
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20 <expand macro="keras_optimizer_common" lr="@LR@">
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21 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>
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22 <param argument="decay" type="float" value="0" optional="true" label="decay" help="Learning rate decay over each update."/>
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23 <yield/>
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24 </expand>
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25 </xml>
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26
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27 <xml name="keras_activations">
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28 <param argument="activation" type="select" label="Activation function">
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29 <option value="linear" selected="true">None / linear (default)</option>
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30 <option value="softmax">softmax</option>
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31 <option value="elu">elu</option>
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32 <option value="selu">selu</option>
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33 <option value="softplus">softplus</option>
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34 <option value="softsign">softsign</option>
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35 <option value="relu">relu</option>
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36 <option value="tanh">tanh</option>
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37 <option value="sigmoid">sigmoid</option>
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38 <option value="hard_sigmoid">hard_sigmoid</option>
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39 <option value="exponential">tanh</option>
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40 </param>
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41 </xml>
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42
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43 <xml name="keras_initializers" token_argument="kernel_initializer" token_default_kernel="false" token_default_bias="false" token_default_embeddings="false">
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44 <param argument="@ARGUMENT@" type="select" label="@ARGUMENT@">
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45 <option value="zeros" selected="@DEFAULT_BIAS@">zero / zeros / Zeros</option>
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46 <option value="ones">one / ones / Ones</option>
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47 <option value="constant">constant / Constant</option>
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48 <option value="random_normal">normal / random_normal / RandomNormal</option>
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49 <option value="random_uniform" selected="@DEFAULT_EMBEDDINGS@">uniform / random_uniform / RandomUniform</option>
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50 <option value="truncated_normal">truncated_normal / TruncatedNormal</option>
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51 <option value="orthogonal">orthogonal / Orthogonal</option>
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52 <option value="identity">identity / Identity</option>
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53 <option value="glorot_normal">glorot_normal</option>
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54 <option value="glorot_uniform" selected="@DEFAULT_KERNEL@">glorot_uniform</option>
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55 <option value="he_normal">he_normal</option>
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56 <option value="he_uniform">he_uniform</option>
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57 <option value="lecun_normal">lecun_normal</option>
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58 <option value="lecun_uniform">lecun_uniform</option>
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59 </param>
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60 </xml>
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61
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62 <xml name="keras_regularizers" token_argument="kernel_regularizer">
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63 <param argument="@ARGUMENT@" type="text" value="(0. , 0.)" optional="true" label="@ARGUMENT@"
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64 help="(l1, l2). l1/l2: float; L1/l2 regularization factor. (0., 0.) is equivalent to `None`"/>
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65 </xml>
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66
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67 <xml name="keras_constraints_options">
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68 <section name="constraint_options" title="Constraint Advanced Options" expanded="false">
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69 <yield/>
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70 <param argument="axis" type="text" value="0" help="Integer or list of integers. axis along which to calculate weight norms">
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71 <sanitizer>
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72 <valid initial="default">
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73 <add value="["/>
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74 <add value="]"/>
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75 </valid>
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76 </sanitizer>
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77 </param>
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78 </section>
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79 </xml>
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80
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81 <xml name="keras_constraints" token_argument="kernel_constraint">
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82 <conditional name="@ARGUMENT@">
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83 <param argument="constraint_type" type="select" label="@ARGUMENT@">
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84 <option value="None" selected="true">None (default)</option>
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85 <option value="MaxNorm">maxnorm / max_norm / MaxNorm</option>
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86 <option value="NonNeg">nonneg / non_neg / NonNeg</option>
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87 <option value="UnitNorm">unitnorm / unit_norm / UnitNorm</option>
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88 <option value="MinMaxNorm">min_max_norm / MinMaxNorm</option>
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89 </param>
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90 <when value="None"/>
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91 <when value="MaxNorm">
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92 <expand macro="keras_constraints_options">
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93 <param argument="max_value" type="float" value="2" help="the maximum norm for the incoming weights."/>
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94 </expand>
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95 </when>
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96 <when value="NonNeg">
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97 </when>
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98 <when value="UnitNorm">
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99 <expand macro="keras_constraints_options"/>
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100 </when>
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101 <when value="MinMaxNorm">
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102 <expand macro="keras_constraints_options">
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103 <param argument="min_value" type="float" value="0." help="the minimum norm for the incoming weights."/>
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104 <param argument="max_value" type="float" value="1." help="the maximum norm for the incoming weights."/>
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105 <param argument="max_value" type="float" value="1." help="rate for enforcing the constraint."/>
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106 </expand>
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107 </when>
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108 </conditional>
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109 </xml>
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110
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111 <xml name="keras_layer_types_core">
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112 <option value="Dense">Dense</option>
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113 <option value="Activation">Activation</option>
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114 <option value="Dropout">Dropout</option>
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115 <option value="Flatten">Flatten</option>
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116 <option value="Reshape">Reshape</option>
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117 <option value="Permute">Permute</option>
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118 <option value="RepeatVector">RepeatVector</option>
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119 <!--option value="Lambda">Lambda - Not supported</option-->
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120 <option value="ActivityRegularization">ActivityRegularization</option>
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121 <option value="Masking">Masking</option>
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122 <option value="SpatialDropout1D">SpatialDropout1D</option>
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123 <option value="SpatialDropout2D">SpatialDropout2D</option>
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124 <option value="SpatialDropout3D">SpatialDropout3D</option>
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125 </xml>
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126
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127 <xml name="keras_layer_types_Convolutional">
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128 <option value="Conv1D">Conv1D</option>
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129 <option value="Conv2D">Conv2D</option>
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130 <option value="SeparableConv1D">SeparableConv1D</option>
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131 <option value="SeparableConv2D">SeparableConv2D</option>
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132 <option value="DepthwiseConv2D">DepthwiseConv2D</option>
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133 <option value="Conv2DTranspose">Conv2DTranspose</option>
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134 <option value="Conv3D">Conv3D</option>
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135 <option value="Conv3DTranspose">Conv3DTranspose</option>
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136 <option value="Cropping1D">Cropping1D</option>
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137 <option value="Cropping2D">Cropping2D</option>
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138 <option value="Cropping3D">Cropping3D</option>
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139 <option value="UpSampling1D">UpSampling1D</option>
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140 <option value="UpSampling2D">UpSampling2D</option>
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141 <option value="UpSampling3D">UpSampling3D</option>
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142 <option value="ZeroPadding1D">ZeroPadding1D</option>
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143 <option value="ZeroPadding2D">ZeroPadding2D</option>
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144 <option value="ZeroPadding3D">ZeroPadding3D</option>
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145 </xml>
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146
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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147 <xml name="keras_layer_types_Pooling">
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148 <option value="MaxPooling1D">MaxPooling1D</option>
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149 <option value="MaxPooling2D">MaxPooling2D</option>
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150 <option value="MaxPooling3D">MaxPooling3D</option>
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151 <option value="AveragePooling1D">AveragePooling1D</option>
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152 <option value="AveragePooling2D">AveragePooling2D</option>
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153 <option value="AveragePooling3D">AveragePooling3D</option>
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154 <option value="GlobalMaxPooling1D">GlobalMaxPooling1D</option>
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155 <option value="GlobalAveragePooling1D">GlobalAveragePooling1D</option>
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156 <option value="GlobalMaxPooling2D">GlobalMaxPooling2D</option>
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157 <option value="GlobalAveragePooling2D">GlobalAveragePooling2D</option>
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158 <option value="GlobalMaxPooling3D">GlobalMaxPooling3D</option>
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159 <option value="GlobalAveragePooling3D">GlobalAveragePooling3D</option>
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160 </xml>
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161
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162 <xml name="keras_layer_types_locally_connected">
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163 <option value="LocallyConnected1D">LocallyConnected1D</option>
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164 <option value="LocallyConnected2D">LocallyConnected2D</option>
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165 </xml>
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166
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167 <xml name="keras_layer_types_recurrent">
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168 <option value="RNN">RNN</option>
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169 <option value="Masking">Masking</option>
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170 <option value="SimpleRNN">SimpleRNN</option>
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171 <option value="GRU">GRU</option>
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172 <option value="LSTM">LSTM</option>
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173 <option value="ConvLSTM2D">ConvLSTM2D</option>
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174 <option value="ConvLSTM2DCell">ConvLSTM2DCell</option>
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175 <option value="SimpleRNNCell">SimpleRNNCell</option>
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176 <option value="GRUCell">GRUCell</option>
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177 <option value="LSTMCell">LSTMCell</option>
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178 <option value="CuDNNGRU">CuDNNGRU</option>
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179 <option value="CuDNNLSTM">Dense</option>
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180 </xml>
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181
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182 <xml name="keras_layer_types_embedding">
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183 <option value="Embedding">Embedding</option>
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184 </xml>
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185
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186 <xml name="keras_layer_types_advanced_activations">
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187 <option value="LeakyReLU">LeakyReLU</option>
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188 <option value="PReLU">PReLU</option>
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189 <option value="ELU">ELU</option>
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190 <option value="ThresholdedReLU">ThresholdedReLU</option>
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191 <option value="Softmax">Softmax</option>
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192 <option value="ReLU">ReLU</option>
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193 </xml>
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194
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195 <xml name="keras_layer_types_normalization">
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196 <option value="BatchNormalization">BatchNormalization</option>
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197 </xml>
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198
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199 <xml name="keras_layer_types_noise">
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200 <option value="GaussianNoise">GaussianNoise</option>
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201 <option value="GaussianDropout">GaussianDropout</option>
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202 <option value="AlphaDropout">AlphaDropout</option>
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203 </xml>
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204
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205 <xml name="keras_layer_types_merge">
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206 <option value="Add">Add</option>
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207 <option value="Subtract">Subtract</option>
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208 <option value="Multiply">Multiply</option>
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209 <option value="Average">Average</option>
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210 <option value="Maximum">Maximum</option>
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211 <option value="Minimum">Minimum</option>
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212 <option value="Concatenate">Concatenate</option>
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213 <option value="Dot">Dot</option>
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214 </xml>
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215
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216 <!--Core Layers-->
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217
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218 <xml name="layer_Dense">
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219 <param argument="units" type="integer" value="" optional="false" label="units" help="Positive integer, dimensionality of the output space."/>
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220 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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221 <expand macro="keras_activations"/>
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222 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" />
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223 <expand macro="keras_initializers" default_kernel="true"/>
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224 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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225 <expand macro="keras_regularizers"/>
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226 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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227 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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228 <expand macro="keras_constraints"/>
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229 <expand macro="keras_constraints" argument="bias_constraint"/>
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230 </section>
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231 <yield/>
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232 </xml>
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233
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234 <xml name="layer_Dropout">
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235 <param argument="rate" type="float" value="" min="0." max="1.0" help="Fraction of the input units to drop."/>
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236 <param argument="noise_shape" type="text" value="" help="1D integer tensor representing the shape of the
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237 binary dropout mask that will be multiplied with the input."/>
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238 <param argument="seed" type="integer" value="" min="0" optional="true" help="A Python integer to use as random seed."/>
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239 <yield/>
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240 </xml>
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241
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242 <xml name="layer_Flatten">
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243 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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244 <option value="channels_last">channels_last</option>
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245 <option value="channels_first">channels_first</option>
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246 </param>
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247 <yield/>
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248 </xml>
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249
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250 <xml name="layer_Input">
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251 <param argument="shape" type="text" value="" help="A shape tuple (integer), not including the batch size.For instance, `shape=(32,)`"/>
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252 <!--param argument="batch_shape" type="text" value="" optional="true" help="A shape tuple (integer), including the batch size.For instance, `batch_shape=(10, 32)`"/-->
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253 <param argument="name" type="text" value="" optional="true" help="An optional string name for the layer. Unique. autogenerated if it isn't provided."/>
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254 <param argument="dtype" type="select" help="The data type expected by the input">
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255 <option value="float32" selected="true">float32</option>
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256 <option value="float64">float64</option>
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257 <option value="int32">int32</option>
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258 <option value="int64">int64</option>
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259 <!--TODO add more DTYPEs-->
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260 </param>
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261 <param argument="sparse" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
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262 <!--param argument="tensor" type="data" format="zip" help="Optional existing tensor to wrap into the `Input` layer."/ -->
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263 <yield/>
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264 </xml>
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265
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266 <xml name="layer_Reshape">
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267 <param argument="target_shape" type="text" value="" help="Tuple of integers. Does not include the batch axis."/>
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268 <yield/>
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269 </xml>
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270
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271 <xml name="layer_Permute">
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272 <param argument="dims" type="text" value="" help="Tuple of integers. Permutation pattern, does not include the samples dimension.
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273 Indexing starts at 1. For instance, (2, 1) permutes the first and second dimension of the input."/>
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274 <yield/>
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275 </xml>
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276
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277 <xml name="layer_RepeatVector">
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278 <param argument="n" type="integer" value="" help="repetition factor"/>
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279 </xml>
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280
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281 <xml name="layer_Lambda">
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282 <param argument="function" type="text" value="lambda x: " help="The function to be evaluated. Only lambda function is supported!"/>
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283 <yield/>
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284 </xml>
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285
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286 <xml name="layer_ActivityRegularization">
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287 <param argument="l1" type="float" value="0." min="0." help="L1 regularization factor (positive float)."/>
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288 <param argument="l2" type="float" value="0." min="0." help="L2 regularization factor (positive float)."/>
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289 <yield/>
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290 </xml>
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291
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292 <xml name="layer_Masking">
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293 <param argument="mask_value" type="float" value="0." help="Masks a sequence by using a mask value to skip timesteps."/>
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294 <yield/>
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295 </xml>
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296
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297 <xml name="layer_SpatialDropout1D">
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298 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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299 <yield/>
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300 </xml>
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301
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302 <xml name="layer_SpatialDropout2D">
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303 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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304 <param argument="data_format" type="select">
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305 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 3</option>
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306 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option>
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307 </param>
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308 <yield/>
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309 </xml>
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310
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311 <xml name="layer_SpatialDropout3D">
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312 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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313 <param argument="data_format" type="select">
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314 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 4</option>
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315 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option>
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316 </param>
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317 <yield/>
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318 </xml>
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319
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320 <!--Convolutional Layers-->
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321
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322 <xml name="layer_Conv1D">
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323 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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324 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
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325 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/>
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326 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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327 <param argument="padding" type="select" help="">
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328 <option value="valid" selected="true">valid - no padding</option>
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329 <option value="same">same - output has the same length as the original input</option>
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330 <option value="causal">causal - causal (dilated) convolutions</option>
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331 </param>
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332 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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333 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
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334 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
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335 </param>
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336 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution."/>
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337 <expand macro="keras_activations"/>
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338 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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339 <expand macro="keras_initializers" default_kernel="true"/>\
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340 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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341 <expand macro="keras_regularizers"/>
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342 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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343 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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344 <expand macro="keras_constraints"/>
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345 <expand macro="keras_constraints" argument="bias_constraint"/>
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346 </section>
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347 <yield/>
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348 </xml>
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349
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350 <xml name="layer_Conv2D">
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351 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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352 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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353 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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354 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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355 <param argument="padding" type="select" help="">
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356 <option value="valid" selected="true">valid - no padding</option>
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357 <option value="same">same - output has the same length as the original input</option>
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358 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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359 </param>
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360 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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361 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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362 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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363 </param>
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364 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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365 <expand macro="keras_activations"/>
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366 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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367 <expand macro="keras_initializers" default_kernel="true"/>\
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368 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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369 <expand macro="keras_regularizers"/>
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370 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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371 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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372 <expand macro="keras_constraints"/>
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373 <expand macro="keras_constraints" argument="bias_constraint"/>
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374 </section>
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375 <yield/>
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376 </xml>
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377
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378 <xml name="layer_SeparableConv1D">
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379 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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380 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
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381 <param argument="strides" type="text" value="1" help="An integer or tuple/list of single integer, specifying the stride length of the convolution. "/>
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382 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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383 <param argument="padding" type="select" help="">
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384 <option value="valid" selected="true">valid - no padding</option>
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385 <option value="same">same - output has the same length as the original input</option>
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386 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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387 </param>
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388 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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389 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
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390 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
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391 </param>
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392 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution. "/>
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393 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
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394 <expand macro="keras_activations"/>
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395 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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396 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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397 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/>
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398 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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399 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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400 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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401 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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402 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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403 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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404 <expand macro="keras_constraints" argument="pointwise_constraint"/>
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405 <expand macro="keras_constraints" argument="bias_constraint"/>
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406 </section>
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407 <yield/>
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408 </xml>
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409
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410 <xml name="layer_SeparableConv2D">
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411 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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412 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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413 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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414 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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415 <param argument="padding" type="select" help="">
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416 <option value="valid" selected="true">valid - no padding</option>
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417 <option value="same">same - output has the same length as the original input</option>
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418 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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419 </param>
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420 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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421 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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422 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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423 </param>
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424 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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425 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
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426 <expand macro="keras_activations"/>
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427 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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428 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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429 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/>
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430 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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431 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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432 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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433 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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434 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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435 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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436 <expand macro="keras_constraints" argument="pointwise_constraint"/>
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437 <expand macro="keras_constraints" argument="bias_constraint"/>
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438 </section>
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439 <yield/>
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440 </xml>
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441
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442 <xml name="layer_DepthwiseConv2D">
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443 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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444 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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445 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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446 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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447 <param argument="padding" type="select" help="">
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448 <option value="valid" selected="true">valid - no padding</option>
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449 <option value="same">same - output has the same length as the original input</option>
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450 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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451 </param>
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452 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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453 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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454 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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455 </param>
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456 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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457 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
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458 <expand macro="keras_activations"/>
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459 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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460 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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461 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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462 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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463 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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464 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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465 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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466 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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467 <expand macro="keras_constraints" argument="bias_constraint"/>
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468 </section>
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469 <yield/>
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470 </xml>
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471
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472 <xml name="layer_Conv2DTranspose">
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473 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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474 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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475 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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476 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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477 <param argument="padding" type="select" help="">
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478 <option value="valid" selected="true">valid - no padding</option>
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479 <option value="same">same - output has the same length as the original input</option>
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480 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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481 </param>
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482 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the amount of padding along the height and width of the output tensor."/>
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483 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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484 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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485 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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486 </param>
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487 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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488 <expand macro="keras_activations"/>
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diff changeset
489 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
490 <expand macro="keras_initializers" default_kernel="true"/>
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diff changeset
491 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
492 <expand macro="keras_regularizers" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
493 <expand macro="keras_regularizers" argument="bias_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
494 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
495 <expand macro="keras_constraints"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
496 <expand macro="keras_constraints" argument="bias_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
497 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
498 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
499 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
500
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
501 <xml name="layer_Conv3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
502 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
503 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
504 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
505 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
506 <param argument="padding" type="select" help="">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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507 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
508 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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509 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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510 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
511 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
512 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
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diff changeset
513 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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514 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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515 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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516 <expand macro="keras_activations"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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517 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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518 <expand macro="keras_initializers" default_kernel="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
519 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
520 <expand macro="keras_regularizers" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
521 <expand macro="keras_regularizers" argument="bias_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
522 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
523 <expand macro="keras_constraints"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
524 <expand macro="keras_constraints" argument="bias_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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525 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
526 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
527 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
528
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
529 <xml name="layer_Conv3DTranspose">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
530 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
531 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
532 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
533 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
534 <param argument="padding" type="select" help="">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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535 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
536 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
537 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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538 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
539 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the amount of padding along the depth, height, and width. "/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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540 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
541 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
542 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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543 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
544 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
545 <expand macro="keras_activations"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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546 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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547 <expand macro="keras_initializers" default_kernel="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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548 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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549 <expand macro="keras_regularizers" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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550 <expand macro="keras_regularizers" argument="bias_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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551 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
552 <expand macro="keras_constraints"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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553 <expand macro="keras_constraints" argument="bias_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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554 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
555 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
556 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
557
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
558 <xml name="layer_Cropping1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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559 <param argument="cropping" type="text" value="(1, 1)" help="int or tuple of int (length 2) How many units should be trimmed off at the beginning and end of the cropping dimension (axis 1).
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
560 If a single int is provided, the same value will be used for both."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
561 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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562 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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563
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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564 <xml name="layer_Cropping2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
565 <param argument="cropping" type="text" value="((0, 0), (0, 0))" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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566 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
567 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
568 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
569 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
570 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
571 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
572
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
573 <xml name="layer_Cropping3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
574 <param argument="cropping" type="text" value="((1, 1), (1, 1), (1, 1))" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
575 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
576 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
577 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
578 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
579 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
580 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
581
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
582 <xml name="layer_UpSampling1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
583 <param argument="size" type="integer" value="2" min="0" help="integer. Upsampling factor."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
584 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
585 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
586
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
587 <xml name="layer_UpSampling2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
588 <param argument="size" type="text" value="(2, 2)" help="int, or tuple of 2 integers. The upsampling factors for rows and columns."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
589 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
590 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
591 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
592 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
593 <param argument="interpolation" type="select">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
594 <option value="nearest" selected="true">nearest</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
595 <option value="bilinear">bilinear</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
596 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
597 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
598 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
599
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
600 <xml name="layer_UpSampling3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
601 <param argument="size" type="text" value="(2, 2, 2)" help="int, or tuple of 3 integers. The upsampling factors for dim1, dim2 and dim3."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
602 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
603 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
604 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
605 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
606 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
607 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
608
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
609 <xml name="layer_ZeroPadding1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
610 <param argument="padding" type="text" value="1" help="int, or tuple of int (length 2)"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
611 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
612 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
613
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
614 <xml name="layer_ZeroPadding2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
615 <param argument="padding" type="text" value="(1, 1)" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
616 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
617 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
618 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
619 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
620 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
621 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
622
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
623 <xml name="layer_ZeroPadding3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
624 <param argument="padding" type="text" value="(1, 1, 1)" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
625 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
626 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
627 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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628 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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629 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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630 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
631
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
632 <!--Pooling Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
633
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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634 <xml name="layer_MaxPooling1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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635 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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636 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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637 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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638 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
639 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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640 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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641 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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642 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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643 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
644 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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645 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
646 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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647 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
648
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
649 <xml name="layer_MaxPooling2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
650 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
651 <param name="strides" type="text" value="" help="Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
652 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
653 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
654 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
655 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
656 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
657 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
658 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
659 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
660 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
661 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
662 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
663
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
664 <xml name="layer_MaxPooling3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
665 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
666 (2, 2, 2) will halve the size of the 3D input in each dimension."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
667 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
668 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
669 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
670 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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671 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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672 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
673 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
674 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
675 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
676 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
677 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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678 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
679
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
680 <xml name="layer_AveragePooling1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
681 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
682 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
683 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
684 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
685 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
686 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
687 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
688 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
689 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
690 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
691 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
692 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
693 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
694
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
695 <xml name="layer_AveragePooling2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
696 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
697 <param name="strides" type="text" value="" help=" Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
698 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
699 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
700 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
701 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
702 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
703 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
704 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
705 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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706 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
707 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
708 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
709
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
710 <xml name="layer_AveragePooling3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
711 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
712 (2, 2, 2) will halve the size of the 3D input in each dimension."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
713 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
714 <param argument="padding" type="select" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
715 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
716 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
717 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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718 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
719 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
720 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
721 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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722 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
723 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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724 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
725
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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726 <xml name="layer_GlobalMaxPooling1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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727 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
728 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
729 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
730 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
731 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
732 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
733
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
734 <xml name="layer_GlobalMaxPooling2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
735 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
736 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
737 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
738 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
739 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
740 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
741
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
742 <xml name="layer_GlobalMaxPooling3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
743 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
744 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
745 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
746 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
747 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
748 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
749
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
750 <xml name="layer_GlobalAveragePooling1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
751 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
752 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
753 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
754 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
755 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
756 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
757
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
758 <xml name="layer_GlobalAveragePooling2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
759 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
760 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
761 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
762 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
763 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
764 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
765
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
766 <xml name="layer_GlobalAveragePooling3D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
767 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
768 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
769 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
770 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
771 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
772 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
773
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
774 <!--Locally-connected Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
775
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
776 <xml name="layer_LocallyConnected1D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
777 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
778 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
779 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
780 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
781 <param argument="padding" type="select" help="">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
782 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
783 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
784 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
785 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
786 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
787 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
788 <expand macro="keras_activations"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
789 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
790 <expand macro="keras_initializers" default_kernel="true"/>\
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
791 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
792 <expand macro="keras_regularizers"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
793 <expand macro="keras_regularizers" argument="bias_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
794 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
795 <expand macro="keras_constraints"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
796 <expand macro="keras_constraints" argument="bias_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
797 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
798 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
799 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
800
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
801 <xml name="layer_LocallyConnected2D">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
802 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
803 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
804 <param argument="strides" type="text" value="(1, 1)" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
805 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
806 <param argument="padding" type="select" help="">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
807 <option value="valid" selected="true">valid - no padding</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
808 <option value="same">same - output has the same length as the original input</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
809 <!--option value="causal">causal - causal (dilated) convolutions</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
810 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
811 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
812 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
813 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
814 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
815 <expand macro="keras_activations"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
816 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
817 <expand macro="keras_initializers" default_kernel="true"/>\
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
818 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
819 <expand macro="keras_regularizers"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
820 <expand macro="keras_regularizers" argument="bias_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
821 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
822 <expand macro="keras_constraints"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
823 <expand macro="keras_constraints" argument="bias_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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824 </section>
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diff changeset
825 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
826 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
827
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
828 <!--Recurrent Layers>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
829
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
830 <xml name="layer_RNN">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
831 <param argument="cell" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
832 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
833 <param argument="return_sequences" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
834 <param argument="return_state" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
835 <param argument="go_backwards" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
836 <param argument="stateful" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
837 <param argument="unroll" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
838 <param argument="input_dim" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
839 <param argument="input_length" >
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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840 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
841 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
842 </xml-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
843
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
844 <xml name="layer_LSTM">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
845 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
846 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
847 <expand macro="keras_activations"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
848 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
849 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
850 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
851
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
852 <!--Embedding Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
853
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
854 <xml name="layer_Embedding">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
855 <param argument="input_dim" type="integer" value="" min="0" help="int > 0. Size of the vocabulary, i.e. maximum integer index + 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
856 <param argument="output_dim" type="integer" value="" min="0" help="int >= 0. Dimension of the dense embedding."/>
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diff changeset
857 <section name="layer_options" title="Layer Advanced Options" expanded="false">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
858 <expand macro="keras_initializers" argument="embeddings_initializer" default_embeddings="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
859 <expand macro="keras_regularizers" argument="embeddings_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
860 <expand macro="keras_regularizers" argument="activity_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
861 <expand macro="keras_constraints" argument="embeddings_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
862 <param argument="mask_zero" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
863 <param argument="input_length" type="integer" value="" optional="true" min="0" help="Length of input sequences. Required if connecting Flatten then Dense layers upstream"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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864 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
865 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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866 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
867
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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868 <!--Merge Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
869
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
870 <xml name="layer_merge">
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871 <param name="merging_layers" type="text" value="[ ]" label="Type the layer index numbers in a list" help="List of numbers">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
872 <sanitizer>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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873 <valid initial="default">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
874 <add value="["/>
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875 <add value="]"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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876 </valid>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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877 </sanitizer>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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878 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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879 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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880 </xml>
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881
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
882 <xml name="layer_Concatenate" token_type="integer" token_default_value="-1" token_help="Axis along which to concatenate.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
883 <expand macro="layer_merge">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
884 <param argument="axis" type="@TYPE@" value="@DEFAULT_VALUE@" help="@HELP@"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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885 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
886 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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887 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
888
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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889 <xml name="layer_Dot">
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890 <expand macro="layer_Concatenate" type="text" default_value="" help="Integer or tuple of integers, axis or axes along which to take the dot product.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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891 <param argument="normalize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to L2-normalize samples along the dot product axis before taking the dot product?"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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892 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
893 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
894 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
895
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
896 <!--Advanced Activations Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
897
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
898 <xml name="layer_LeakyReLU">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
899 <param argument="alpha" type="float" value="0.3" min="0." help="float >= 0. Negative slope coefficient."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
900 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
901 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
902
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
903 <xml name="layer_PReLU">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
904 <expand macro="keras_initializers" argument="alpha_initializer" default_bias="true"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
905 <expand macro="keras_regularizers" argument="alpha_regularizer"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
906 <expand macro="keras_constraints" argument="alpha_constraint"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
907 <param argument="shared_axes" type="text" value="" help="the axes along which to share learnable parameters for the activation function. E.g. [1, 2]">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
908 <sanitizer>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
909 <valid initial="default">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
910 <add value="["/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
911 <add value="]"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
912 </valid>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
913 </sanitizer>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
914 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
915 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
916 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
917
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
918 <xml name="layer_ELU">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
919 <param argument="alpha" type="float" value="1.0" help="scale for the negative factor."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
920 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
921 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
922
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
923 <xml name="layer_ThresholdedReLU">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
924 <param argument="theta" type="float" value="1.0" help="float >= 0. Threshold location of activation."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
925 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
926 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
927
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
928 <xml name="layer_Softmax">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
929 <param argument="axis" type="integer" value="-1" help="Integer, axis along which the softmax normalization is applied."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
930 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
931 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
932
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
933 <xml name="layer_ReLU">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
934 <param argument="max_value" type="float" value="" min="0." help="float >= 0. Maximum activation value."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
935 <param argument="negative_slope" type="float" value="0." min="0." help="float >= 0. Negative slope coefficient."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
936 <param argument="max_value" type="float" value="0." help="float. Threshold value for thresholded activation."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
937 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
938 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
939
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
940 <!--Normalization Layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
941
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
942 <!--Noise layers-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
943
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
944 <xml name="inbound_nodes_index">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
945 <param name="inbound_nodes" type="integer" value="" label="Type the index number of input layer"
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
946 help="Find the index number at the left top corner of layer configuration block"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
947 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
948
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
949
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
950 <!-- Keras CallBacks -->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
951
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
952 <xml name="keras_callbacks">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
953 <repeat name="callbacks" min="1" max="5" title="callback">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
954 <conditional name="callback_selection">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
955 <param name="callback_type" type="select" label="Choose a callback">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
956 <option value="None" selected="true">None</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
957 <option value="EarlyStopping">EarlyStopping -- Stop training when a monitored quantity has stopped improving</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
958 <!--option value="KerasTensorBoard">TensorBoard</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
959 <!--option value="KerasLearningRateScheduler">LearningRateScheduler</option-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
960 <!--option value="RemoteMonitor">RemoteMonitor - Stream events to a server</option> -->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
961 <!--option value="ModelCheckpoint">ModelCheckpoint - Save the model after every epoch</option>-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
962 <option value="TerminateOnNaN">TerminateOnNaN -- Terminates training when a NaN loss is encountered.</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
963 <option value="ReduceLROnPlateau">ReduceLROnPlateau -- Reduce learning rate when a metric has stopped improving</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
964 <option value="CSVLogger">CSVLogger -- Streams epoch results to a csv file</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
965 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
966 <when value="None"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
967 <when value="EarlyStopping">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
968 <expand macro="keras_callback_common_options">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
969 <param argument="min_delta" type="float" value="0" optional="true" help="Minimum change in the monitored quantity to qualify as an improvement."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
970 <param argument="patience" type="integer" value="0" min="0" help="Number of epochs with no improvement after which training will be stopped."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
971 <param argument="baseline" type="float" value="" optional="true" help="Baseline value for the monitored quantity to reach. Training will stop if the model doesn't show improvement over the baseline."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
972 <param argument="restore_best_weights" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether to restore model weights from the epoch with the best value of the monitored quantity"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
973 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
974 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
975 <!--when value="TensorBoard">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
976 <param argument="histogram_freq" />
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diff changeset
977 <param argument="batch_size" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
978 <param argument="write_graph" />
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diff changeset
979 <param argument="write_grads" />
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diff changeset
980 <param argument="write_images" />
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diff changeset
981 <param argument="embeddings_layer_names" />
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diff changeset
982 <param argument="embeddings_metadata" />
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diff changeset
983 <param argument="embeddings_data" />
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diff changeset
984 <param argument="update_freq" />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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985 </when-->
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diff changeset
986 <!--when value="RemoteMonitor">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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987 <param argument="root" type="text" value="http://localhost:9000" help="Root url of the target server."/>
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988 <param argument="path" type="text" value="/publish/epoch/end/" help="Path relative to root to which the events will be sent. E.g., root + '/publish/epoch/end/'"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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989 <param argument="field" type="text" value="data" optional="true" help="JSON field under which the data will be stored. The field is used only if the payload is sent within a form (i.e. send_as_json is set to False)."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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990 <param argument="headers" type="text" value="" optional="true" help="Dictionary; optional custom HTTP headers.">
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diff changeset
991 <sanitizer>
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992 <valid initial="default">
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diff changeset
993 <add value="{"/>
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diff changeset
994 <add value="}"/>
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995 </valid>
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diff changeset
996 </sanitizer>
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diff changeset
997 </param>
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998 <param argument="send_as_json" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether the request should be send as application/json."/>
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999 </when>
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diff changeset
1000 <when value="ModelCheckpoint">
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diff changeset
1001 <expand macro="keras_callback_common_options">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1002 <param argument="save_best_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="If True, the latest best model according to the quantity monitored will not be overwritten."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1003 <param argument="save_weights_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="If True, then only the model's weights will be saved, else the full model is saved."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1004 <param argument="period" type="integer" value="1" min="1" help="Interval (number of epochs) between checkpoints."/>
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diff changeset
1005 </expand>
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1006 </when>-->
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diff changeset
1007 <when value="TerminateOnNaN"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1008 <when value="ReduceLROnPlateau">
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diff changeset
1009 <expand macro="keras_callback_common_options">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1010 <param argument="factor" type="float" value="0.1" help="Factor by which the learning rate will be reduced. new_lr = lr * factor"/>
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diff changeset
1011 <param argument="patience" type="integer" value="10" help="Number of epochs with no improvement after which learning rate will be reduced."/>
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diff changeset
1012 <param argument="min_delta" type="float" value="0.0001" help="Threshold for measuring the new optimum, to only focus on significant changes."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1013 <param argument="cooldown" type="integer" value="0" help="Number of epochs to wait before resuming normal operation after lr has been reduced."/>
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diff changeset
1014 <param argument="min_lr" type="float" value="0" help="Lower bound on the learning rate."/>
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diff changeset
1015 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1016 </when>
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diff changeset
1017 <when value="CSVLogger"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1018 </conditional>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1019 </repeat>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1020 </xml>
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diff changeset
1021
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diff changeset
1022 <xml name="keras_callback_common_options">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1023 <param argument="monitor" type="select" help="Quantity to be monitored.">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1024 <option value="val_loss" selected="true">val_loss</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1025 <option value="loss">loss</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1026 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1027 <param argument="mode" type="select">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1028 <option value="auto" selected="true">auto -- the direction is automatically inferred from the name of the monitored quantity</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1029 <option value="min">min -- training will stop when the quantity monitored has stopped decreasing</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1030 <option value="max">max -- training will stop when the quantity monitored has stopped increasing</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1031 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1032 <yield/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1033 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1034
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1035 <!--Batch online data generators-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1036
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diff changeset
1037 <xml name="params_fasta_dna_batch_generator">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1038 <param argument="seq_length" type="integer" value="1000" optional="true" help="Integer. Sequence length or number of bases."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1039 <param argument="shuffle" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" help="Whether to shuffle the data between epochs."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1040 <param argument="seed" type="integer" value="" optional="true" help="Integer, random seed for data shuffling"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1041 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1042
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1043 <xml name="params_fasta_protein_batch_generator">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1044 <expand macro="params_fasta_dna_batch_generator"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1045 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1046
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1047 <xml name="params_genomic_interval_batch_generator">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1048 <expand macro="params_fasta_dna_batch_generator"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1049 <param argument="blacklist_regions" type="select" help="Tabix-indexed list of regions from which we should not output sequences">
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1050 <option value="hg38" selected="true">hg38</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1051 <option value="hg19">hg19</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1052 </param>
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1053 <param argument="center_bin_to_predict" type="integer" value="200" optional="true" help="Query the tabix-indexed file for a region of length."/>
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1054 <param argument="feature_thresholds" type="float" value="0.5" optional="true" help="Threshold values to determine target value."/>
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1055 <param argument="random_state" type="integer" value="" optional="true" help="Random seed number, to control the sample position in each invertal."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1056 </xml>
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diff changeset
1057
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1058 <xml name="params_image_batch_generator">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1059 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1060
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1061
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1062 <!--composite params macro-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1063
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1064 <xml name="keras_compile_params_section">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1065 <section name="compile_params" title="Compile Parameters" expanded="true">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1066 <param name="loss" type="select" label="Select a loss function">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1067 <option value="binary_crossentropy" selected="true">binary_crossentropy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1068 <option value="mean_squared_error">mse / MSE/ mean_squared_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1069 <option value="mean_absolute_error">mae / MAE / mean_absolute_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1070 <option value="mean_absolute_percentage_error">mape / MAPE / mean_absolute_percentage_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1071 <option value="mean_squared_logarithmic_error">msle / MSLE / mean_squared_logarithmic_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1072 <option value="squared_hinge">squared_hinge</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1073 <option value="hinge">hinge</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1074 <option value="categorical_hinge">categorical_hinge</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1075 <option value="logcosh">logcosh</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1076 <option value="categorical_crossentropy">categorical_crossentropy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1077 <option value="sparse_categorical_crossentropy">sparse_categorical_crossentropy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1078 <option value="kullback_leibler_divergence">kld / KLD / kullback_leibler_divergence</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1079 <option value="poisson">poisson</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1080 <option value="cosine_proximity">cosine / cosine_proximity</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1081 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1082 <conditional name="optimizer_selection">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1083 <param name="optimizer_type" type="select" label="Select an optimizer">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1084 <option value="SGD" selected="true">SGD - Stochastic gradient descent optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1085 <option value="RMSprop">RMSprop - RMSProp optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1086 <option value="Adagrad">Adagrad - Adagrad optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1087 <option value="Adadelta">Adadelta - Adadelta optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1088 <option value="Adam">Adam - Adam optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1089 <option value="Adamax">Adamax - A variant of Adam based on the infinity norm </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1090 <option value="Nadam">Nadam - Nesterov Adam optimizer </option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1091 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1092 <when value="SGD">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1093 <expand macro="keras_optimizer_common">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1094 <param argument="momentum" type="float" value="0" optional="true" label="Momentum"
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1095 help="float >= 0. Parameter that accelerates SGD in the relevant direction and dampens oscillations."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1096 <param argument="decay" type="float" value="0" label="Decay" optional="true" help="float &gt;= 0. Learning rate decay over each update."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1097 <param argument="nesterov" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply Nesterov momentum"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1098 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1099 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1100 <when value="RMSprop">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1101 <expand macro="keras_optimizer_common_more" lr="0.001">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1102 <param argument="rho" type="float" value="0.9" optional="true" label="rho" help="float &gt;= 0."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1103 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1104 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1105 <when value="Adagrad">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1106 <expand macro="keras_optimizer_common_more" lr="0.001"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1107 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1108 <when value="Adadelta">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1109 <expand macro="keras_optimizer_common_more" lr="1.0">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1110 <param argument="rho" type="float" value="0.95" optional="true" label="rho" help="float &gt;= 0."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1111 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1112 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1113 <when value="Adam">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1114 <expand macro="keras_optimizer_common_more" lr="0.001">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1115 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1116 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1117 <param argument="amsgrad" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply the AMSGrad variant?"
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1118 help="Refer to paper `On the Convergence of Adam and Beyond`"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1119 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1120 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1121 <when value="Adamax">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1122 <expand macro="keras_optimizer_common_more" lr="0.002">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1123 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1124 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1125 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1126 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1127 <when value="Nadam">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1128 <expand macro="keras_optimizer_common" lr="0.002">
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1129 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1130 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1131 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1132 <param argument="schedule_decay" type="float" value="0.004" optional="true" label="schedule_decay" help="float, 0 &lt; beta &lt; 1."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1133 </expand>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1134 </when>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1135 </conditional>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1136 <param name="metrics" type="select" optional="true" multiple="true" label="Select metrics">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1137 <option value="acc" selected="true">acc / accruracy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1138 <option value="binary_accuracy">binary_accuracy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1139 <option value="categorical_accuracy">categorical_accuracy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1140 <option value="sparse_categorical_accuracy">sparse_categorical_accuracy</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1141 <option value="mse">mse / MSE / mean_squared_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1142 <option value="mae">mae / MAE / mean_absolute_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1143 <option value="mae">mape / MAPE / mean_absolute_percentage_error</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1144 <option value="cosine_proximity">cosine_proximity</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1145 <option value="cosine">cosine</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1146 <option value="none">none</option>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1147 </param>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1148 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1149 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1150
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1151 <xml name="keras_fit_params_section">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1152 <section name="fit_params" title="Fit Parameters" expanded="true">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1153 <param name="epochs" type="integer" value="1" min="1" label="epochs"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1154 <param name="batch_size" type="integer" value="32" optional="true" label="batch_size" help="Integer or blank for 32"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1155 <param name="steps_per_epoch" type="integer" value="" optional="true" label="steps_per_epoch" help="The number of steps (batches of samples) before declaring one epoch finished and starting the next epoch. The default None is equal to the number of samples in your dataset divided by the batch size, or 1 if that cannot be determined."/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1156 <param name="validation_steps" type="integer" value="" optional="true" label="validation_steps" help="Default None. Total number of steps (batches of samples) to validate before stopping." />
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1157 <!--`validation_freq` will be available in next keras version-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1158 <!--param name="validation_freq" type="integer" value="1" optional="true" label="validation_freq" help="Integer only at current moment. If an integer, specifies how many training epochs to run before a new validation run is performed."/-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1159 <expand macro="keras_callbacks"/>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1160 </section>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1161 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1162
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1163 <!--Citation-->
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1164 <xml name="keras_citation">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1165 <citation type="bibtex">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1166 @misc{chollet2015keras,
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1167 title={Keras},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1168 url={https://keras.io},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1169 author={Chollet, Fran\c{c}ois and others},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1170 year={2015},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1171 howpublished={https://keras.io},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1172 }
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1173 </citation>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1174 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1175
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1176 <xml name="tensorflow_citation">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1177 <citation type="bibtex">
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1178 @misc{tensorflow2015-whitepaper,
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1179 title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1180 url={https://www.tensorflow.org/},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1181 note={Software available from tensorflow.org},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1182 author={
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1183 Mart\'{\i}n~Abadi and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1184 Ashish~Agarwal and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1185 Paul~Barham and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1186 Eugene~Brevdo and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1187 Zhifeng~Chen and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1188 Craig~Citro and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1189 Greg~S.~Corrado and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1190 Andy~Davis and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1191 Jeffrey~Dean and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1192 Matthieu~Devin and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1193 Sanjay~Ghemawat and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1194 Ian~Goodfellow and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1195 Andrew~Harp and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1196 Geoffrey~Irving and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1197 Michael~Isard and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1198 Yangqing Jia and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1199 Rafal~Jozefowicz and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1200 Lukasz~Kaiser and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1201 Manjunath~Kudlur and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1202 Josh~Levenberg and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1203 Dandelion~Man\'{e} and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1204 Rajat~Monga and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1205 Sherry~Moore and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1206 Derek~Murray and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1207 Chris~Olah and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1208 Mike~Schuster and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1209 Jonathon~Shlens and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1210 Benoit~Steiner and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1211 Ilya~Sutskever and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1212 Kunal~Talwar and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1213 Paul~Tucker and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1214 Vincent~Vanhoucke and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1215 Vijay~Vasudevan and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1216 Fernanda~Vi\'{e}gas and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1217 Oriol~Vinyals and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1218 Pete~Warden and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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1219 Martin~Wattenberg and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1220 Martin~Wicke and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1221 Yuan~Yu and
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1222 Xiaoqiang~Zheng},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1223 year={2015},
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1224 }
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1225 </citation>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1226 </xml>
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1227
d0ed8e976b79 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1228 </macros>